Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05467 ATGGATTTTCCATCGCTAACTGCTACTGGGTCTGGTGAGGAACAAGATTCTCACCAATCAGGCAAGGATGAAAGGAGCTTCCATCGTCATGCCTCTTATCAGATATCCAAACTTGAAGAAATGTTCAAGGAATACTCACATCCAGACGAAAGTCGACGACTTCAATTAAGTGAAGAGCTTGGACTTGAACCAAGACAAGTAAAATTTTGGTTCCAAAATAGGAGGACAAAAGGAAAGAACATAAGTGAGCGAATGGATAACAATGCTCTTCGGATTCAGAATGAAAAGTTTCGATCAGAAAACATTGTACTCCGAGAGACGTTGAAGGGTGTTCTTTGCTTATCTTGTCGGCGTCCAACCATACGAGAAGATCATGTCCCCGACCATTCCATACAACAAATGAAGATAGAAAATGCACTGTTACGTCAAGAGCGTGAGAGATTAACCGGGCTTCTGCCACTGAACCTGCTATTAGAGAATCCAATGCTTCTTGAAACAAATCCTCCACCTTCATCTGATTTATGGAAAAGTTTGCTAAACCGAAATGTTGAAATGCCTGTTCCTGCTCCTGCTGCTGATCATCAACGTATTCCTATTCTTGATCAACAAATTCCTGCTCCTGATCCAAACATTATTCCTGCTTTTGGTCATGATATTCCTCCCATTATTCCTACCCTTGATCAAGATATTTCAACTATAACTAATCAAAATATTCCTGTTCTTATTGATCAAGATATTTCCTCCTTTGGTCAGGATATTCCTGCTCTTGATGATCTAGGTTTTGATGCAATTTCAAATGATGATCATTTGTTGCCCCTCCCATTGAGCCCAGTAATTATTACAGATCCTGAATCTGATAAAGCATTGATGATTGAGATTGCAAATACTGCTATGGAAGAATTAGTAAGGCTTTTGAGTTCAAATGATCCTTTTTGGTTCAGATCTGTAGTTGATGGAAAATTCATTCTCCAACGTGCAACCTATGAAAAGATATTCCATAGAGGTAATCACCTAAAGGGACCCCTTGCACGTATAGAGTCTTCAAAGGATTCACAAATAGTCAACATTGAAGCCACCCAATTGGTTGATATGCTTTTAAATTCGGACAAATGGGTTGATCTTTTCTCAACAATAGTTACAAAAGCACAAACAATCCATGTATTTGAAAGCGGTTTGTCAGGAAGTCGAGATGGAGCTTTGCAATTGATGGATGCACATTTGCACATTCTTTCACCTTTGCTTCCAACTCGAGAATTTGTCTTCCTCCGTTATTGTAAACAAGTTGAGGAAGGTATGTGGGTGGTAGTAGATGTGTCATGTGATTCCTCATCACAATACGGAGCCACTCCTACTCACACTTGGAGGTTTCCCTCTGGATGCTTGATTCAAAAAATCAGTGATGGATCTTGCAGGGTTTCTTGGCTCGAACATGTAGAAGTGGATGAGGAGATTCCAATTGACCATCTTTTTAGAGAAGTTATTCGTAGCAAGAATCCATATGGAGCAGAAAAATGGCTTTTCACACTTGAAAGAACGTGTGAGAGATTTTCATGCTCCACTACACGTGAAAACATACTTGCTTATGACATTGAAGGAGTGATTGAAATACCTGAAGGAAGGAGGAGTGTGATGCGGCTTGGTTATCGTATGCTGAAGAGTTTTTTTGGAACTTTAGACATGTCAAGTAACATGGATATCCCAACAGATTTAACTAGGTTGAGTAATGGTATATTTAGGATATCTGCTCGCCTTAGCACAGAACCAGGCGTGGCAAAAGGCATGATTGTCAGTGCTGCTATCTCCTTTTGGCTTCCTCTTTCTCCTCAAAATGTTTTTGACTTCTTGAAAGATGGTAACAAACGAACTCAGTGGGATGCTCTAAGCTATGGAAATCAAATGCGTGAGATTCAACGCATCTCAAATCGAGATCATCCCGGCAATTGTACTTCAATTTTCAAGCCTTTATTCCCTGAAGGAAGTAATATGTTGATTCTGCAAGAAAGTTACACAGATCCATTAGGATCTTTGGTGGTATTTGCTCCTTTAGATTTATCAACATTGAATTTCGCAATGAAGGGAGAAGACTCTTCAATGTTTCCTCTTTTGCCCTCTGGCTTTAGCATAACAGGTGATGGTCGATCAAATGTTGGCAACTTAGGAGGTTCGTTGGTAACAATTGGGTACCAAATATTGTCTTGCAATCCAACTGAAACGGGACAGCCAGAAAAGGATTCTATAGATGCTGTCACCTCACTTATTGCCTCAACCGTGGATAAAGTTAAAATTGCTCTACATTGTTCCAATTTGGATTAA 2313 0.3978 MDFPSLTATGSGEEQDSHQSGKDERSFHRHASYQISKLEEMFKEYSHPDESRRLQLSEELGLEPRQVKFWFQNRRTKGKNISERMDNNALRIQNEKFRSENIVLRETLKGVLCLSCRRPTIREDHVPDHSIQQMKIENALLRQERERLTGLLPLNLLLENPMLLETNPPPSSDLWKSLLNRNVEMPVPAPAADHQRIPILDQQIPAPDPNIIPAFGHDIPPIIPTLDQDISTITNQNIPVLIDQDISSFGQDIPALDDLGFDAISNDDHLLPLPLSPVIITDPESDKALMIEIANTAMEELVRLLSSNDPFWFRSVVDGKFILQRATYEKIFHRGNHLKGPLARIESSKDSQIVNIEATQLVDMLLNSDKWVDLFSTIVTKAQTIHVFESGLSGSRDGALQLMDAHLHILSPLLPTREFVFLRYCKQVEEGMWVVVDVSCDSSSQYGATPTHTWRFPSGCLIQKISDGSCRVSWLEHVEVDEEIPIDHLFREVIRSKNPYGAEKWLFTLERTCERFSCSTTRENILAYDIEGVIEIPEGRRSVMRLGYRMLKSFFGTLDMSSNMDIPTDLTRLSNGIFRISARLSTEPGVAKGMIVSAAISFWLPLSPQNVFDFLKDGNKRTQWDALSYGNQMREIQRISNRDHPGNCTSIFKPLFPEGSNMLILQESYTDPLGSLVVFAPLDLSTLNFAMKGEDSSMFPLLPSGFSITGDGRSNVGNLGGSLVTIGYQILSCNPTETGQPEKDSIDAVTSLIASTVDKVKIALHCSNLD. 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05467 770 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Seca12g05467 770 SUPERFAMILY Bet v1-like 285 516 - -
Seca12g05467 770 MobiDBLite consensus disorder prediction 1 15 - -
Seca12g05467 770 SMART HOX_1 23 85 IPR001356 GO:0003677
Seca12g05467 770 SUPERFAMILY Homeodomain-like 17 86 IPR009057 -
Seca12g05467 770 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Seca12g05467 770 Gene3D - 9 95 - -
Seca12g05467 770 MobiDBLite consensus disorder prediction 1 29 - -
Seca12g05467 770 FunFam Homeobox-leucine zipper protein HDG1 11 97 - -
Seca12g05467 770 ProSiteProfiles START domain profile. 283 518 IPR002913 GO:0008289
Seca12g05467 770 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 765 IPR042160 -
Seca12g05467 770 Coils Coil 131 151 - -
Seca12g05467 770 SMART START_1 292 515 IPR002913 GO:0008289
Seca12g05467 770 Pfam START domain 292 515 IPR002913 GO:0008289
Seca12g05467 770 CDD homeodomain 25 80 IPR001356 GO:0003677
Seca12g05467 770 Pfam Homeodomain 29 79 IPR001356 GO:0003677
Seca12g05467 770 CDD START_ArGLABRA2_like 287 514 - -
Seca12g05467 770 Gene3D - 291 498 IPR023393 -
Seca12g05467 770 SUPERFAMILY Bet v1-like 537 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05467 Seca-Chr12 145323076 145328926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05467 286 764 Homeobox Transcription Factor Family AT1G73360 43.725 1.88e-128 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca12g05467 START 3.8e-33 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05467 K09338 - gmx:100783586 600.512