Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05466 ATGCATGAGCAAACTGGTTGCATTGATCCCAACACAATGGCAGGAGGTGTAAGCTCTCTAAATGATAGCTTTCCTCAAACTCTGCCAGACCCACCACCATCACTTATGGTTGCAGGAAACACCATAAACAGCAATAATAGCCTTGAAGAGAATTTCAGGCCTTCTGTGGAGGAACTCACCTATCACCATCACAATCTACAGCAACCAGAAGATGTCTCCAACTTTGTAAATGGAGTCACTGCCACATCTATAGACATCACACATCCACAGCATCTTGGTTTGAACATGGGGAACTCCTACAACAACAACATGGACACCCATTTGGTCCAAGATGTCATTGATGGCCTTCCCTATCAGCAGTCAACTTGGGACCCTAGTGTTCAGGAGTTACAAGATATGGGCTATACTAATCAGCCAGAACACCACCAACCACATGAACAATTTCAACATATGGAGGTACAAAATTGCAGCCAAAGCTACAATCCCTCTTCCATACTGGACCCTCCTTACCCTTCACCAGATCTCCTAAACCTTCTCCACCTACCCAGATGTTCAGCTTCATCTTTGCTGACCAATCCACCCACCATTTGCATCACAAACCCAACTCAGAAGACACCCAATTTTCATAATTCAATGGGGTTTCTTGGAGACCTTCCAATAGGATCAGAGAACACAAGTGCATCCTCAGTTTTGTATGATCCTCTATTTCATTTGAACCTGCCTCCACAGCCTCCAGCCCTCAGAGAGCTGTTCCAGTCTCTCCCCCGTGGCTACAGCTTGCCAACCAACTCCAGGAATGGTTCTCTTTTTGGTGGAGGGGATGAGATAGAGGGAGATGGGAGCCAGCTTGACATGGGAGTGCTGGAATTCAATAGGGTCACAGCTTCTGTTGGCAAAGGAAGGGAAGGAAAAGGTACCAAACATTTTGCAACTGAGAAACAAAGAAGAGAGCAATTGAATGGAAAGTACAAAATCTTGAAGGATCTTATCCCAAACCCCACCAAGTCTGATAGAGCATCTGTGGTGGGAGATGCCATTGAGTATATAAGAGAGCTGATCAGAACAGTCAATGAGCTCAAATTATTGGTGGAGAAGAAAAGATATGGGAGGGAGAGGTGCAAGAGGCCCAAAACTGAAGATGATGCTGCAGAGAGCTGTAACATAAAGCCTTTTGGTGATCCAGATGGATGCATAAGGACTTCATGGCTCCAGAGGAAATCCAAAGACAGTGAAGTTGATGTCCGGATTATTGATGATGATGTTACAATCAAACTCTTTCAAAGGAAGAAGATCAACTGTCTGCTGTTTGTCTCCAAGGTTCTGGATGAACTCCAGTTGGAACTTCACCATGTTGCAGGTGGACATGTTGGTGAATATTGCAGTTTCTTGTTCAATAGCAAGATAATTGAAGGTTCATCAGTCTATGCAAGTGCCATAGCCAACAGGGTGATTGATGTTCTGGACAGTCAGTATGCAGCAGCAGTTCCACATACAAGTAGCTATTAG 1506 0.4469 MHEQTGCIDPNTMAGGVSSLNDSFPQTLPDPPPSLMVAGNTINSNNSLEENFRPSVEELTYHHHNLQQPEDVSNFVNGVTATSIDITHPQHLGLNMGNSYNNNMDTHLVQDVIDGLPYQQSTWDPSVQELQDMGYTNQPEHHQPHEQFQHMEVQNCSQSYNPSSILDPPYPSPDLLNLLHLPRCSASSLLTNPPTICITNPTQKTPNFHNSMGFLGDLPIGSENTSASSVLYDPLFHLNLPPQPPALRELFQSLPRGYSLPTNSRNGSLFGGGDEIEGDGSQLDMGVLEFNRVTASVGKGREGKGTKHFATEKQRREQLNGKYKILKDLIPNPTKSDRASVVGDAIEYIRELIRTVNELKLLVEKKRYGRERCKRPKTEDDAAESCNIKPFGDPDGCIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKINCLLFVSKVLDELQLELHHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIDVLDSQYAAAVPHTSSY. 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05466 501 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 304 369 IPR036638 GO:0046983
Seca12g05466 501 PANTHER TRANSCRIPTION FACTOR BHLH91 3 494 IPR045895 GO:0006355|GO:0048658
Seca12g05466 501 Gene3D - 300 374 IPR036638 GO:0046983
Seca12g05466 501 CDD bHLH_AtMYC1_like 308 372 IPR045896 -
Seca12g05466 501 Pfam Helix-loop-helix DNA-binding domain 306 352 IPR011598 GO:0046983
Seca12g05466 501 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 303 352 IPR011598 GO:0046983
Seca12g05466 501 SMART finulus 309 358 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05466 Seca-Chr12 145298860 145301129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05466 6 496 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31220 38.868 5.86e-88 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g05466 HLH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05466 - - gmx:100782512 810.061