Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05458 ATGGAAGGTTTTCACACTTCTATAACCTCTCCTTTTTCTTACACATTCCCTATCAGTTCTGCTGGTGGTAGTAGCAGCAATGTTACCACTGCCACTAGCACTTACAACACCACTCCATGGATGAATAGCAGGATATGGAGCAAGCTTCCTCAAAGGCTTCTTGATCGTGTTCTAGCATTCCTTCCTCCACCTGCTTTCTTTCGTGCACGTTGTGTTTGCAAGAGATGGTATGGTCTTCTATTTTCCAGCACTTTTCTTGAATTATACCTTCAAGTATCACCACACCACCATTGGTTCATGTTCTTCAAACACAAGACCCGCAAAAACTGCATATACAAGAACAACAATGGTGGTTGTAGTGGACATGTTAGTAGTAGTAGTACTTTTTCTTCTTCATGTGAAGGGTACTTGTTTGATCCTTATGACATGACATGGTACCACATTTCCTTTGCTTTTATTCCTTCTGGCTTCTCTCCAGCTTCTTCATCTGCAGGATTACTCTGTTGGGTCTCAGATGAAGCTGGACCAAAAACCATGCTTCTCTGTAACCCTATAGTTGGTTCTTTAACTCAGTTACCACCAACTCTGAGACCAAGACTCTTCCCTTCTATTGGCCTAACCATTAGCCCCACTTGCATAGATGTTACTGTTGGTGGGGATGACATGATATCTCCTTATGCAGTGAAAAACTTGACATCTGAAAGCTTTCATATTGATGGAGGTGGGTTTTATTCCATATGGGGAACTACCTCTTCTCTGCCTAGGCTCTGTAGCCTTGAATCTGGAAGAATGGTTTATGCAGAGGGGAAATTCTACTGCATGAATTGTAGTCCTTTTAGTGTGTTGGCTTATGACATTACATCAAACACTTGGTTCAAAATCCAAGCCCCTATGAGGAGGTTCTTAAGGTCACCAAACTTGGTTGAATGTAAAGGAAAGCTGTTACTAGTTGCTGCTGTTGAGAAGAGTAAGCTGAATGTGCCAAAGAGTTTGAGGGTGTGGAGTTTGCAAGCTTGTGGGACAATGTGGGTGGAATCAGAGAGAATGCCACAACAGCTTTATATTCAGTTTGCTGAATTGGAAGTTGGGAATGGATTTGAATGTGTAGGGCATGGAGAGTTTATTGTTATCATGATTAGAGGAACAGATAAGGCATTGCTCTATGATATTTCTAGGAAGAGATGGCAGTGGATTCCTCCATGTCCTTACACTGCATATGATGCCTTTGAATTGCATGGTTTTGCTTATGAACCAAGATTGGCCACACCAGTTACTGGTCTTCTTGATCAATTGGCACTGCCATTCCAGAGTTTTAATGCTTAA 1323 0.4187 MEGFHTSITSPFSYTFPISSAGGSSSNVTTATSTYNTTPWMNSRIWSKLPQRLLDRVLAFLPPPAFFRARCVCKRWYGLLFSSTFLELYLQVSPHHHWFMFFKHKTRKNCIYKNNNGGCSGHVSSSSTFSSSCEGYLFDPYDMTWYHISFAFIPSGFSPASSSAGLLCWVSDEAGPKTMLLCNPIVGSLTQLPPTLRPRLFPSIGLTISPTCIDVTVGGDDMISPYAVKNLTSESFHIDGGGFYSIWGTTSSLPRLCSLESGRMVYAEGKFYCMNCSPFSVLAYDITSNTWFKIQAPMRRFLRSPNLVECKGKLLLVAAVEKSKLNVPKSLRVWSLQACGTMWVESERMPQQLYIQFAELEVGNGFECVGHGEFIVIMIRGTDKALLYDISRKRWQWIPPCPYTAYDAFELHGFAYEPRLATPVTGLLDQLALPFQSFNA. 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05458 440 ProSiteProfiles F-box domain profile. 43 92 IPR001810 GO:0005515
Seca12g05458 440 PANTHER BNACNNG10540D PROTEIN 35 422 - -
Seca12g05458 440 Pfam F-box domain 46 78 IPR001810 GO:0005515
Seca12g05458 440 SMART fbox_2 49 89 IPR001810 GO:0005515
Seca12g05458 440 SUPERFAMILY F-box domain 39 118 IPR036047 GO:0005515
Seca12g05458 440 Gene3D - 116 415 IPR015915 GO:0005515
Seca12g05458 440 FunFam protein UNUSUAL FLORAL ORGANS 42 86 - -
Seca12g05458 440 Gene3D - 41 86 - -
Seca12g05458 440 SUPERFAMILY Galactose oxidase, central domain 71 404 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05458 Seca-Chr12 145247461 145248783 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05458 - - gmx:100776797 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05458 12 145247461 145248783 Seca12g05458 12 145247461 145248783 ECH