Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05452 ATGGCGAATAGATTTTCCTTGATCAATGAAATTAAAGCTGGGAGAGTTGACTGGAAAATTAAAGTAAGAGTGATCAGTTTGTGGACACCATATGATTTTAAGAATCCTGGAGTCATTTCAAGTATGGAAATGATTCTTGCAGATGAAAAGGGTCACAGAATTCATGCTACTGTAAAACGTGCATGTTTGGACCCACACCTAAACATGATTCAAGAAGGATTTACCTATGAGATGCACAATTTGGCAGTTGGTCAGCCTGAGCTCAATTTGAAGACAATTAAACACAAATTCAAGCTCAATTTTATTCAATCAACAAGAGTTATCCCTACAAATGATCACCATATTCCTGTTAACAATTTCCAATTCCTTTCATTTGATCAAATTATTCAAGATGTATTGGTCATGTTGTTGAGAAAGATTACATTAAGGAAAAGGACAAAGAAGGGAAAAAAAAGTAAACTGATTGATGTTGTCCTTGAGGATATGGACAAGAATCGTCTCATCTGCACTCTGTGGGGTAATTTTGCGGATCAAATGTTCAACTATCTGAATACAACAACAGATAACAATGATAGTATTGTTGTCATTTTGCAGCTTGGAAAAAGGAAGATATTTAATGGACAAGTTGGGATTTCAAATGCTTACAATGGTACTAAATTGCTAATCAACCCGGATGTAGCTGAAGTAACTAATTACAAGGAAAAACTTCAAATTGGGGACTTATCTTTGACTCAAGTAGTAAGCCAAATGTCTTCACAACAGTCTCTTTCATTTTCTGATGATTTGCTTGCGTTAAGAAGAATGACTATTTCAGACTTAATAGAAAGCATCCAGACAGCCAATGGATCATTGTTGGCAACCATTATAGAAATAGATCTTGATAAAGATTGGTGGTTTCAATCATGTTCTAAATGTTACAAATATGTTGTCGAGATGGGGACAAAGCATTATTGTGAAAAATGCAAGATAACTGTTGTTGTCCCAAGGTTTAAAGTGAATGCAACTGTGATTGATGAAACTGGGTCAACATGTTTGATCATGTTTGATGGTGTCCTTTCTAAGTTTTTGGGCAAAACTGCTTCTGAGTTACTTGGGGCAAATGATAAGGCAAAAGACAAAGGATATTGTCCCCCTGAGATTGATGCATTGGTGGATAAAGAGTTTTTGTTCAAAGTGGAAGTCTCTGATGCAAACATTGTTTACAATTTCAAAACATACAAAGTCAGGTTCATGACAGATGACAAAGAACTGATTGATCAGTTTAAGATTATGCACTCAGTTAAGGATTTGTATGAAGATAATGAGTACAATGAACAACAACCAAATTTGACAATACAAGTAGATGATAACATGAAGGATAAATCTGAGCATGAATTGTCAGCCTCTAAAATTGAGTTGTCTCGACACATTGAAGTGCTTAATAAAGGGAAGCAATGGAGCACTTTTTCCTTAGGTGCTTAA 1461 0.3518 MANRFSLINEIKAGRVDWKIKVRVISLWTPYDFKNPGVISSMEMILADEKGHRIHATVKRACLDPHLNMIQEGFTYEMHNLAVGQPELNLKTIKHKFKLNFIQSTRVIPTNDHHIPVNNFQFLSFDQIIQDVLVMLLRKITLRKRTKKGKKSKLIDVVLEDMDKNRLICTLWGNFADQMFNYLNTTTDNNDSIVVILQLGKRKIFNGQVGISNAYNGTKLLINPDVAEVTNYKEKLQIGDLSLTQVVSQMSSQQSLSFSDDLLALRRMTISDLIESIQTANGSLLATIIEIDLDKDWWFQSCSKCYKYVVEMGTKHYCEKCKITVVVPRFKVNATVIDETGSTCLIMFDGVLSKFLGKTASELLGANDKAKDKGYCPPEIDALVDKEFLFKVEVSDANIVYNFKTYKVRFMTDDKELIDQFKIMHSVKDLYEDNEYNEQQPNLTIQVDDNMKDKSEHELSASKIELSRHIEVLNKGKQWSTFSLGA. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05452 486 PANTHER OS03G0429900 PROTEIN 5 401 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca12g05452 486 Gene3D - 3 109 IPR012340 -
Seca12g05452 486 CDD RPA1_DBD_A_like 19 107 - -
Seca12g05452 486 Pfam Replication factor-A C terminal domain 285 396 IPR013955 -
Seca12g05452 486 SUPERFAMILY Nucleic acid-binding proteins 5 112 IPR012340 -
Seca12g05452 486 Pfam Domain of unknown function DUF223 43 131 IPR003871 -
Seca12g05452 486 CDD RPA1_DBD_B_like 155 229 - -
Seca12g05452 486 Gene3D - 114 241 IPR012340 -
Seca12g05452 486 Gene3D - 247 424 IPR012340 -
Seca12g05452 486 CDD RPA1_DBD_C 283 399 IPR047192 -
Seca12g05452 486 SUPERFAMILY Nucleic acid-binding proteins 120 240 IPR012340 -
Seca12g05452 486 SUPERFAMILY Nucleic acid-binding proteins 266 405 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05452 Seca-Chr12 145189771 145194470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05452 18 374 Core DNA Replication Machinery Family AT5G08020 24.672 1.24e-18 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05452 - - mtr:112422829 311.997