Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05446 ATGGCTGAAACTCACTCTCATGCTCATGCTCATTCTCCTACACCCATAATAACCTACCCTTCTCATGAACAAGTTGGTGGTTTCGATTGGATGGTTCTTGTGGCAGCAATTCTATGTGCCGTTGTTTGTGCTCTTGGCCTTAACACTATGTTACAATGTGTCTTTCAATGTGCCAATCGTGTCCTAACAGAGCCTCTTCAATGGATTGCTTCTCGTAGGCTCAATTCTGGACTTAAGAGGAAAGAAATGGTAGCTTTGCCAACTTTAACATATAGCCATTCATCAGGTGGTGGTTCTGATCCATCTTCTTCAGCTTCAAGTTGTGTCATTTGCTTAGCAGAATTTTGTGATGGGGAACAAATAAGGTTCCTCCCAAAGTGCAATCACCATTTCCATGTGGTTTGTATTGACAAGTGGCTTCTATCTCATTCTTCTTGTCCTACTTGCAGGCATCTTACTCAAGTCTAA 468 0.4209 MAETHSHAHAHSPTPIITYPSHEQVGGFDWMVLVAAILCAVVCALGLNTMLQCVFQCANRVLTEPLQWIASRRLNSGLKRKEMVALPTLTYSHSSGGGSDPSSSASSCVICLAEFCDGEQIRFLPKCNHHFHVVCIDKWLLSHSSCPTCRHLTQV. 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05446 155 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Seca12g05446 155 SMART ring_2 108 149 IPR001841 -
Seca12g05446 155 Pfam Ring finger domain 107 150 IPR001841 -
Seca12g05446 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Seca12g05446 155 PANTHER RING-H2 FINGER PROTEIN ATL78 10 152 IPR044602 GO:0016567|GO:0016740
Seca12g05446 155 SUPERFAMILY RING/U-box 107 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05446 Seca-Chr12 145167355 145167822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05446 29 151 C3H Transcription Factor Family AT3G10910 43.511 1.81e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05446 - - gmx:100779286 221.476