Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05436 ATGGTGAAGGGACGCCAAGGAGAGCGCGTTAGGGGTACAATCCTTGGATACAAAAGATCCAAATCAAACCAATACCCAAACACATCTCTGGTCCAAATTGAAGGAGTGAACACTACAGAAGAGGTGTCATGGTATGCTGGCAAGCAAATGGCATATATCTACAAGGCCAAGGTGAAGAAGAATGGAACCTATTACCGCTGCATATGGGGTAAGGTTACAAGGCCTCACGGAAACAGTGGTATTGTTCGTGCAAAATTCAAGTCAAATCTTCCTCCCAAATCAATGGGAGCACGGATAAGGGTGTTTATGTATCCAAGTAATATGAGATTCAGGTGA 336 0.4405 MVKGRQGERVRGTILGYKRSKSNQYPNTSLVQIEGVNTTEEVSWYAGKQMAYIYKAKVKKNGTYYRCIWGKVTRPHGNSGIVRAKFKSNLPPKSMGARIRVFMYPSNMRFR. 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05436 111 ProSitePatterns Ribosomal protein L35Ae signature. 70 91 IPR018266 GO:0003735|GO:0005840|GO:0006412
Seca12g05436 111 FunFam 60S ribosomal protein L35a 6 108 - -
Seca12g05436 111 PANTHER 60S RIBOSOMAL PROTEIN L35A 2 107 IPR001780 GO:0003735|GO:0005840|GO:0006412
Seca12g05436 111 Hamap 50S ribosomal protein L35Ae [rpl35ae]. 10 102 IPR001780 GO:0003735|GO:0005840|GO:0006412
Seca12g05436 111 SUPERFAMILY Translation proteins 10 102 IPR009000 -
Seca12g05436 111 Gene3D translation elongation factor selb, chain A, domain 4 6 108 IPR038661 -
Seca12g05436 111 Pfam Ribosomal protein L35Ae 10 102 IPR001780 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05436 Seca-Chr12 145020495 145025330 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05436 1 108 Cytoplasmic Ribosomal Protein Gene Family AT1G07070 86.607 2.18e-69 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05436 K02917 - jre:108991889 210.305