Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05422 ATGGGAGCCAAATTCTTTGGAAAGAAACTGGTGTCTTCCTCAGTAGGTGCAACTTGTAGCGACAAACCAATTGACCCTTCTCCTGGGATCTGTATGGAAGGAACTTCATCATCTGTGGATGTTGATGAAAAGAAATTGAACTTGTCTCCAACAGTCTCCCGGATGGAGAGGAATTCACCTTCACCGTCCAAGGAAGTTTTATCTCCCTCTAAAATGACTAACTTAGAAGCAAATGATGAACAGGTGGAGGGGAAGCCTGATTTATCTTGTAATAAAACCCCTTTAAGAAAACAACTTGTTCTTGCTATTGCTGCTGGTGGAGAGGAAGTGAGAAAAAGGAAGCATAAAGTTGTTAGTGACAATACTAGTCAAAAGAAGCATAGGACTGAAAAGGGGAAAAAAATTGTGAATTCTTCTATAAAGTCCAAGTCTGTAAACAATAAAGTACAGAAGAAGCAAAAGTCTATAACCCATAGCCTTTCTGCATCTGTCTCAAAAGAAGATGTTGGAAACAAGAGTTCTGATGCCCAGCTGAAAGATGAGAAGTTCTCTCAGGTAATGAAAGACGCATCAAATGAGCTTGATAAAGCAGGAAGTAATGTGAATGAAACTTTGATGAATGGAGACAATGCTATTGTTGAACCTCTGCAGGTTGACCGGGTTCTAGGGTGTCGAATTCTAGGTGAGAGCACAAACTCATTACGACACTTATCTTTGAACGTTGGGGATGACTCACCTTCTGGCAATCTGGTAATATCAGAAAACCAGACCAGACTAGTAGAGGATAATTCTGCTTGTGATAATGATTTGGATATTGAATCAGCTGAAAATCTTATTGATGATCCTCAAAATGTTATCAAGAGTCCTGATAAAGAAGGAACATTGAAAAACACTGACAGAGGGGAAAAAATTCATGTATACAGAAGATCGACAACAAAGGAAAGTAAGAAAGGAAATCCCATGGATTCATTAAATAAAGCCACTGATGATTTAGGTTCCTGTGCCAGGGATGGTAAAGATCAGGATGACTCTACTGCATCTGCTGAACAGTTGGAAAAGCCAAATGACAAGGTGGAGACAGAGGAGAGTATTACTGTTGCTTTAAGAAGTGAGGATAACAGTGAGCTTCCAAAAAATTGTGAAATACATGTCTCTCATGAAACAAAACAAATTGAAGTGGATATGGAGAAGGGGTTAAGTAGCAGTGTTGATAATAAAGTTCAGGATGCTAATGTGGTTGAACCTGCATGTCCAAATGGAGAGAAAGTTTCCTATGAATTTTTAGTTAAATGGGTAGGAAAGTCTCATGTTCATAATAGTTGGATTTCTGAGTCCCATTTAAAAGTTCTTGCAAAGAGAAAACTGGAAAATTACAAGGCAAAGTATGGGATGGCAATAATAGATATTTGTGAGGAGCGTTGGAAGCAGCCTCAGCGGTTGCTTGCTCTTCGTACTTCCAAACAGGGAAGATCTGAGGCATTTGTAAAATGGACTGGACTACCGTATGATGAATGCACTTGGGAAAGTTTAGATGAACCTGTGCTTCAAAATTCTTCTCATTTGATTACCCTTTTTAATAGGCTCGAAACTCTTACACGGGAAAGGGATGCATCAAAGGAAAATTCAACTAGAAAAAACAATGATCATCAAAATGATATATCTAATCTTGTAGAGCAACCTAAGGAACTAAAAGGTGGTTCTTTGTTTCCCCATCAGCTTGAGGCTCTAAACTGGTTGCGGAAATGCTGGTATAAGTCCAAAAATGTGATACTTGCTGATGAGATGGGGCTTGGGAAAACTGTGTCTGCTTGTGCTTTTATTTCATCATTGTATTTTGAATTCAAAGTTTCACTTCCTTGCTTGGTCCTGGTACCTCTTTCCACAATGCCTAATTGGCTTGCTGAATTTTCACTATGGGCTCCAGATGTGAATGTTGTAGAATATCATGGCTGTGCAAAAGCAAGAGCCTTAATTCGCCAGTATGAATGGCATGCAAATGATCCAAGTGGATTGAATAAGAAAACAGAAGCCTATAAATTTAATGTGCTTTTAACAACATATGAAATGGTTCTTGCTGATTCTTCACATTTGCGGGCAGTTCCTTGGGAAGTTCTTGTTGTTGATGAGGGCCATCGACTGAAGAATTCAGAAAGTAAGCTTTTCAGTTTGTTAAATACATTCTCTTTTCAACATCGTGTTCTGTTGACGGGTACCCCTCTCCAGAACAACATTGGTGAGATGTACAACTTGCTTAATTTCTTACAGCCTGCTTCATTCCCTTCTCTATCTTCATTTGAGGAGAAATTTAATGATCTTACGACTGCAGAGAAAGTTGATGAATTGAAAAAACTTGTTGCTCCTCATATGCTTCGTAGACTTAAAAAGGATGCCATGCAAAATATTCCCCCCAAGACAGAAAGAATGGTTCCTGTTGAATTGTCTTCCATCCAAGCTGAGTATTATCGTGCAATGCTTACAAAGAATTATCAAATATTGCGGAATATTGGGAAAGGGGTTGCCCAACAATCTATGCTGAACATTGTGATGCAACTGAGAAAGGTCTGCAATCATCCATATCTCATACCAGGAACTGAGCCTGATTCTGGATCTGTTGAATTCCTCCATGAAATGAGAATAAAGGCTTCGGCTAAGTTGACTCTTCTGCATTCTATGCTAAAGATTTTACATAAAGAAGGTCATAGAGTTCTTATTTTCTCACAAATGACAAAGCTTCTGGACATCCTGGAGGACTATTTAAACATAGAATTTGGGCCTAAAACTTATGAGAGAGTGGATGGCTCTGTTTCTGTAGCTGATCGTCAGGCAGCAATTGCACGCTTTAACCAAGACAAAAGTCGATTTGTTTTCTTGTTATCCACCCGCTCTTGTGGACTTGGGATAAATTTGGCAACTGCTGACACTGTCATCATCTATGATTCTGATTTCAACCCTCATGCAGATATCCAAGCAATGAATCGAGCACACAGAATTGGGCAATCAAATAGACTTTTGGTATACCGACTTGTGGTCCGTGCTAGTGTTGAAGAGCGCATCTTGCAGCTTGCTAAGAAGAAATTGATGCTTGATCAACTTTTTGTAAATAAGTCTGGATCTCAAAAAGAAGTAGAAGATATTTTAAAATGGGGAACTGAAGAACTCTTCAGTGATTCTCCTGGCCTGAATGGGAAAGATATAAGTGAAAATAGTAATAATAACAAAGATGAGGCAGTAGCAGATATAGAACATAAGCATCGGAAGCGGACTGGTGGTCTTGGAGATGTATATAAGGATAAGTGTACTGATATAAGCAGTAAGATCCTTTGGGATGAAACTGCTATTTCAAAATTGCTTGACCGTTCGAACCTTCAGGATGGTTCAACCGATATAGCTGACGGAGATTCTGAAAATGATATGCTGGGCTCAGTGAAGGCCCTTGAATGGAATGATGAACCAGCTGAAGAAAACGTAGTGGGTGAATCTCCTCCTCATGGGACTGATGATATGTGTACACAAAATTCTGAGAAGAAAGAGGATAATGTGGTGGTTGGCAATGAAGAAAATGAATGGGACAGACTATTGCGTGTGAGGTGGGAGAAATATCAAAGTGAGGAGGAAGCAGCTCTTGGTCGAGGGAAGCGGCAGAGGAAAGCTGTTTCTTATAGGGAAGTATATGCTCCACACCCAAGTGAAACAATGAGTGAGAGTGGCGGTGAGGAGGAAAAAGAGCCAGAACCAGAGCCTGAGCGTGAATACACACCAGCAGGACGGGCCCTGAAGGCAAAATTTGCTAAACTCCGTGCTCGGCAGAAGGAACGACTTGCTCAGAGGAATGCGGTTAAAGAGTCACATCCTGCTGAGGGACTTCCAGGTACTGAGTCACTCATGCATTCTCCAGCCGTTGCCAAGGGTGGGGATCTAGGAGCTGGACCGACGCATTCAGTTCAAGAGGGGCCTTCTATGAACTTAGAGGACAGCAAATATACTCAGCTTTCAGAAGCTCAAATTAGCAACACTGACTACTTACCAAGGATCGACAAGCTTTCAAAACAGAAAATGAGCAGTCACTTTGATGTTTGTGTCAATAATCCAGGCCGTTCTCTACCTGACATTTTCATTCCAAATAACCATAATAAAGTGGGGCTTAACCACAATATGTTGCCTGTTCTGGGACTTTGTGCTCCTAATGCTAACCAAATGGAATCATCAGAAAGTAACATTTCAAAGTTAAATTGGAGACAAAATAGACATGGAGCCAGACAAGAGTTTCCATTCAGCCTTGCCCCTTGCTCTGGAACATTCGTGGATGCTGATGTCAGAAATAAGGAAAAGGCAGCAAATACCAAACTGTCAGATGCATCACCTGAAAATTTACAACAAAGTTTGAAAAATAGCATCCCTGATAACAGTCTCCCATTTGTTCCATTTCCACCCTTTGTGCAAGGAAAGGAATCTGATGCATTTGAAAATTCAAGCGCTAGATTCTCTGCTTTCCAGGAGAAAATGGTCCTGCCAAATCTTCCATTTGATGAAAGGTTGCTGGGGAGATTTCCACTAACAACTAAGAGCATGCCAAATTCACATCTGGACCTCTTACCTAATTTGTCATTAGGAGGTAGACTTGAAACTTTAAATGGATCTATGCACGAACTTCCAACAATGCCAGCATTACCTACTTTCAAAGTACCCCCTGAAGATTTATTCAGATATAATCAGCAAGACAGGGATGTGCCTCCCACCCTGGGTTTGGGAAAAAGGCCAACCACATTCTCGTCTTTTCCAGAAAACCATAGAAAGGTGCTTGAAAATATAATGATGAGAACTGGATCTGGATCAAGTAATTTATTGAAAAAGAAGTCAAAATCAGATGGGTGGTCTGAAGATGAACTTGATTGCCTCTGGATTGGTGTTCGTAGGCATGGAAAGGGTAATTGGGATACCATGCTCAGAGATCCGAAGTTAAGGTTTTCGAAGTATAAAACACCTGAAGATTTATCAGCAAGGTGGGAAGAGGAACAAGTAAAGGTCTTTCAGGGGCCAGCCTTTCCGGTGCAAAGATCATCCAAGACAAAGTCTACCAAATCTGCACATTTTCCAATATCTGATGGAATGATGGAAAGGGCCTTGCATGGGAGCAAATTTCTTTTGCTACCAAAATTTCAAAACCATCTGACTGACATGAAATTAGGCATAGGTGATTCTGTATCTAGTCTGCCACATTTTGGAACATCGGATCGACCCAGTTCGCAAAATGATCACTTAGCACCTCTTGCATCTTGGAGTTACGATATAAACAAAGGAAAATTTCCTGAAGATGCTGCTGCTGAAACATCTGGTAGACCAGGAACTTCTTCCAATGTACCTACTGAAAGACCATTTCTGCTCAATTCTCTTGGAACCAGCAGCTTGAGTTCTTTAGGTTTGAATTGCTCTGGCAGCATTGATTTACAGCAAAAGGAGGATGACCAAGGAAACACCAAGTGTGGAAAGTTGCCTGTACTTCTGGATGGATCACCCAATGACGCGCGAGACAATCGCATTAATGTAGGAAATGGTGAATCTACTAGCTCAGGATTGTTATCTAACCCCATTAGACCTGATCTTTTGCACTCAAAAGGGGAGGAAGTAGCAGGAACCAGTACTTCAAAAGACAAGCTTCCCCACTGGTTACGAGAAGCTGTGACCAAACCTCCTGAGCCTGAACTGCCACCCACTGTATCAGCTATTGCTCATTCAGTTCGCATGCTATATGGAGAAGATAAGCCTACAATTCCTCCATTTGTGATTCCAGGTCCACCTCCCTCCCTACCAAAGGATCCCAGGTGTAGTCTCAAGAGAAAGAGGAGAATACACAAGCCCAAGCCGAGTCTTGCCGGAACCAGCAAGGACTTTCACAGCAGCCACCATGTTGATAACGGTACTTCGAGCTCAACTCCCTTAGGTCCACCACTTCCTCTACCTCCTCAGGCAGGAACTCTAGGACCTCAGCAGATTGAATCTGACCTTAACTTGCCTCCTCTAAATTTGAAAGTGGGAAACTCATCAGTGCACCAATCAAAAAAGGCAAGCTCAGGACTGTCTCCTTCTCCTGAAGTGCTCCAGTTGGTTGCATCCTGCATTGCTCCTGGCCCGCATCTTCCATCAATTCCCAGTTCTTCAAGCTTTCTTGAGAGCAAGCTTCCATTGCCAAGGCCTGTTGCCAGAGCTAAATTCAAAGACTCAGAAGGCACCTTCAGAAACAATAAGCCTAGGCAGATTTCACCAAAAATTTGGTGTTCACCTCAAGAGCATCAAATAGAAAACATTGATAGTGGAGATTCCAGCAAGACTCAGTCAGATCCCTCTCGGGTTGAACGGCCTGATGAAGTGGAGGAGTTATCATCTGAGGGAACTGTCTCAGATCATGCTGTGAGAGATCAGGAAACATAA 6426 0.416 MGAKFFGKKLVSSSVGATCSDKPIDPSPGICMEGTSSSVDVDEKKLNLSPTVSRMERNSPSPSKEVLSPSKMTNLEANDEQVEGKPDLSCNKTPLRKQLVLAIAAGGEEVRKRKHKVVSDNTSQKKHRTEKGKKIVNSSIKSKSVNNKVQKKQKSITHSLSASVSKEDVGNKSSDAQLKDEKFSQVMKDASNELDKAGSNVNETLMNGDNAIVEPLQVDRVLGCRILGESTNSLRHLSLNVGDDSPSGNLVISENQTRLVEDNSACDNDLDIESAENLIDDPQNVIKSPDKEGTLKNTDRGEKIHVYRRSTTKESKKGNPMDSLNKATDDLGSCARDGKDQDDSTASAEQLEKPNDKVETEESITVALRSEDNSELPKNCEIHVSHETKQIEVDMEKGLSSSVDNKVQDANVVEPACPNGEKVSYEFLVKWVGKSHVHNSWISESHLKVLAKRKLENYKAKYGMAIIDICEERWKQPQRLLALRTSKQGRSEAFVKWTGLPYDECTWESLDEPVLQNSSHLITLFNRLETLTRERDASKENSTRKNNDHQNDISNLVEQPKELKGGSLFPHQLEALNWLRKCWYKSKNVILADEMGLGKTVSACAFISSLYFEFKVSLPCLVLVPLSTMPNWLAEFSLWAPDVNVVEYHGCAKARALIRQYEWHANDPSGLNKKTEAYKFNVLLTTYEMVLADSSHLRAVPWEVLVVDEGHRLKNSESKLFSLLNTFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTAEKVDELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKILHKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVADRQAAIARFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILKWGTEELFSDSPGLNGKDISENSNNNKDEAVADIEHKHRKRTGGLGDVYKDKCTDISSKILWDETAISKLLDRSNLQDGSTDIADGDSENDMLGSVKALEWNDEPAEENVVGESPPHGTDDMCTQNSEKKEDNVVVGNEENEWDRLLRVRWEKYQSEEEAALGRGKRQRKAVSYREVYAPHPSETMSESGGEEEKEPEPEPEREYTPAGRALKAKFAKLRARQKERLAQRNAVKESHPAEGLPGTESLMHSPAVAKGGDLGAGPTHSVQEGPSMNLEDSKYTQLSEAQISNTDYLPRIDKLSKQKMSSHFDVCVNNPGRSLPDIFIPNNHNKVGLNHNMLPVLGLCAPNANQMESSESNISKLNWRQNRHGARQEFPFSLAPCSGTFVDADVRNKEKAANTKLSDASPENLQQSLKNSIPDNSLPFVPFPPFVQGKESDAFENSSARFSAFQEKMVLPNLPFDERLLGRFPLTTKSMPNSHLDLLPNLSLGGRLETLNGSMHELPTMPALPTFKVPPEDLFRYNQQDRDVPPTLGLGKRPTTFSSFPENHRKVLENIMMRTGSGSSNLLKKKSKSDGWSEDELDCLWIGVRRHGKGNWDTMLRDPKLRFSKYKTPEDLSARWEEEQVKVFQGPAFPVQRSSKTKSTKSAHFPISDGMMERALHGSKFLLLPKFQNHLTDMKLGIGDSVSSLPHFGTSDRPSSQNDHLAPLASWSYDINKGKFPEDAAAETSGRPGTSSNVPTERPFLLNSLGTSSLSSLGLNCSGSIDLQQKEDDQGNTKCGKLPVLLDGSPNDARDNRINVGNGESTSSGLLSNPIRPDLLHSKGEEVAGTSTSKDKLPHWLREAVTKPPEPELPPTVSAIAHSVRMLYGEDKPTIPPFVIPGPPPSLPKDPRCSLKRKRRIHKPKPSLAGTSKDFHSSHHVDNGTSSSTPLGPPLPLPPQAGTLGPQQIESDLNLPPLNLKVGNSSVHQSKKASSGLSPSPEVLQLVASCIAPGPHLPSIPSSSSFLESKLPLPRPVARAKFKDSEGTFRNNKPRQISPKIWCSPQEHQIENIDSGDSSKTQSDPSRVERPDEVEELSSEGTVSDHAVRDQET. 2142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05422 2141 SMART DUF1087_2 1167 1228 IPR009463 -
Seca12g05422 2141 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 887 1046 IPR001650 -
Seca12g05422 2141 ProSiteProfiles Chromo and chromo shadow domain profile. 475 537 IPR000953 -
Seca12g05422 2141 MobiDBLite consensus disorder prediction 15 91 - -
Seca12g05422 2141 MobiDBLite consensus disorder prediction 2079 2110 - -
Seca12g05422 2141 Pfam CHD subfamily II, DUF1087 1185 1222 IPR009463 -
Seca12g05422 2141 ProSiteProfiles Chromo and chromo shadow domain profile. 393 461 IPR000953 -
Seca12g05422 2141 MobiDBLite consensus disorder prediction 292 320 - -
Seca12g05422 2141 MobiDBLite consensus disorder prediction 1151 1179 - -
Seca12g05422 2141 Gene3D - 559 801 IPR038718 -
Seca12g05422 2141 MobiDBLite consensus disorder prediction 1992 2027 - -
Seca12g05422 2141 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 580 757 IPR014001 -
Seca12g05422 2141 CDD SF2_C_SNF 882 1009 - -
Seca12g05422 2141 SMART helicmild6 913 998 IPR001650 -
Seca12g05422 2141 SUPERFAMILY Chromo domain-like 467 513 IPR016197 -
Seca12g05422 2141 Coils Coil 539 559 - -
Seca12g05422 2141 Pfam SNF2-related domain 586 861 IPR000330 GO:0005524|GO:0140658
Seca12g05422 2141 Gene3D - 466 527 - -
Seca12g05422 2141 Pfam Chromo (CHRromatin Organisation MOdifier) domain 476 526 IPR023780 -
Seca12g05422 2141 FunFam chromodomain-helicase-DNA-binding protein 1-like isoform X1 802 1029 - -
Seca12g05422 2141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 539 792 IPR027417 -
Seca12g05422 2141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 794 1045 IPR027417 -
Seca12g05422 2141 Gene3D - 802 1029 IPR027417 -
Seca12g05422 2141 CDD CD1_tandem 395 459 - -
Seca12g05422 2141 MobiDBLite consensus disorder prediction 1818 1841 - -
Seca12g05422 2141 MobiDBLite consensus disorder prediction 110 137 - -
Seca12g05422 2141 MobiDBLite consensus disorder prediction 274 362 - -
Seca12g05422 2141 MobiDBLite consensus disorder prediction 1923 2027 - -
Seca12g05422 2141 SMART chromo_7 214 463 IPR000953 -
Seca12g05422 2141 SMART chromo_7 473 530 IPR000953 -
Seca12g05422 2141 SMART ultradead3 564 768 IPR014001 -
Seca12g05422 2141 SUPERFAMILY Homeodomain-like 1623 1669 IPR009057 -
Seca12g05422 2141 MobiDBLite consensus disorder prediction 1924 1938 - -
Seca12g05422 2141 MobiDBLite consensus disorder prediction 51 77 - -
Seca12g05422 2141 Gene3D - 386 462 - -
Seca12g05422 2141 MobiDBLite consensus disorder prediction 1223 1299 - -
Seca12g05422 2141 SUPERFAMILY Chromo domain-like 421 463 IPR016197 -
Seca12g05422 2141 Gene3D - 1596 1696 - -
Seca12g05422 2141 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 92 2048 - -
Seca12g05422 2141 MobiDBLite consensus disorder prediction 110 174 - -
Seca12g05422 2141 MobiDBLite consensus disorder prediction 332 362 - -
Seca12g05422 2141 Pfam Helicase conserved C-terminal domain 887 998 IPR001650 -
Seca12g05422 2141 MobiDBLite consensus disorder prediction 2070 2141 - -
Seca12g05422 2141 CDD SANT_TRF 1624 1668 - -
Seca12g05422 2141 MobiDBLite consensus disorder prediction 138 171 - -
Seca12g05422 2141 CDD CD2_tandem 474 527 - -
Seca12g05422 2141 MobiDBLite consensus disorder prediction 2111 2141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05422 Seca-Chr12 144872188 144886217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05422 548 1041 RAD5 or RAD16-like Gene Family AT1G02670 26.884 1.04e-35 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca12g05422 SNF2_N 4.6e-58 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05422 - - gmx:100793933 3439.82