Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05412 ATGGCTTCTCTATTGCGACTTTACGTCAGACTGAATAACTTGCCTAGTAGGTTGCTAGCATGCAGGCAAGGGGGAAATGGAACTGATCTTTCTCATTTGTCCAGGTACTTTACTGGTCTGTTATCACCATGGAAGGGCATTCTCCTTTTTGGCCCCCCTGGGACAGGAAAGACAATGCTTGCAAAGGCTGTTGCAACGGAGTGCAAGACTACATTTTTTAATATTTCAGCATCTTCTGTTGTCAGCAAATGGCGAGGCATGTTACTAACAACTTCCCCCCTCCTTTCCAGAATTGCAGGTGATTCGGAGAAGTTAGTGAAGGTATTGTTTGAGCTTGCAAGGCATCATGCACCCTCAACAATATTTCTTGATGAAATTGATGCAATCATTAGCCAACGTGGTGAAGCTCGCAGTGAACATGAAGCAAGTAGACGGTTAAAAACCGAGCTACTGGTTCAGATGGATGGTTTGGCACGGACAGATGAGCTTGTTTTTGTTTTGGCGGCAACAAACCTTCCCTGGGAATTGGATGCGGCCATGCTCCGACGTCTTGAGAAGCGAGTATCCTTCCAATATAAGCTTATGCTTGATGTTCATGATATCTGA 606 0.4505 MASLLRLYVRLNNLPSRLLACRQGGNGTDLSHLSRYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGMLLTTSPLLSRIAGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLVQMDGLARTDELVFVLAATNLPWELDAAMLRRLEKRVSFQYKLMLDVHDI. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05412 201 PANTHER AAA DOMAIN-CONTAINING 35 188 - -
Seca12g05412 201 SMART AAA_5 43 194 IPR003593 GO:0016887
Seca12g05412 201 Gene3D - 91 189 IPR027417 -
Seca12g05412 201 Gene3D - 35 86 IPR027417 -
Seca12g05412 201 Pfam ATPase family associated with various cellular activities (AAA) 47 191 IPR003959 GO:0005524|GO:0016887
Seca12g05412 201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 192 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05412 Seca-Chr12 144608274 144613363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05412 41 188 Calmodulin-binding Proteins AT3G56690 36.667 3.13e-23 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05412 K07767 - egt:105951362 263.848