Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05401 ATGGCTGCTCCTCTTATTGTACGAAACCCCACTTTCCACACCCTTCAAGGCCAAAACAAACACTTCACTGCATCCTCTTCCTTCAAGGCCAAATCACTTTCCCTCCGCAATTTTGCTAAGATGGAAGGAAGTGAAATCACTGAGCAAGTAGCAGAGAAAGCAGGGGAGGATTTGGGTGTGAAAAAGAAAATTTTTGTTGCTGGAGCTACTGGTAGCACTGGGAAAAGAATCGTTGAGCAGTTACTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTAGAGACTTGGACAAGGCGAGGACCACCCTCTCTTCTGCCAACCCGTCTCTTCAAATTGTGAAAGCTGATGTCACAGAGGGTTCTGACAAGCTAGCTGAAGCCATTGGCAATGATTCAGAAGCAGTAGTATGTGCCACAGGCTTTCGGCCAGGGTGGGATTTGCTTGCTCCATGGAAGGTTGACAATTTTGGCACAGTGAACCTTGTTGAAGCATGCAGGAAACGTAATGTTAACAGATTCATTCTTATCAGTTCCATTTTAGTTAATGGAGCAGCTATGGGACAGCTACTCAATCCAGCTTACATCTTTCTCAATGTTTTTGGACTCACCTTAGTAGCAAAACTACAGGCAGAGAATTATATTAGGAAATCCGGTATAAATTACACAATAATAAGACCTGGTGGGTTGAGAAACGATCCTCCTACTGGAAATGTTGTTATGGAGCCAGAGGACACCCTTTATGAAGGCACCATATCCAGAGATCAAGTTGCAGAAGTAGCTGTGGAAGCACTGGCTTTTCCTGAGGCATCTTACAAAGTTGTGGAGATAGTTTCTCGCCCTGATGCTCCTAAGCGCTCATACCATGATCTTTTTGGTTCCATAAGGCAACGATGA 891 0.4478 MAAPLIVRNPTFHTLQGQNKHFTASSSFKAKSLSLRNFAKMEGSEITEQVAEKAGEDLGVKKKIFVAGATGSTGKRIVEQLLAKGFAVKAGVRDLDKARTTLSSANPSLQIVKADVTEGSDKLAEAIGNDSEAVVCATGFRPGWDLLAPWKVDNFGTVNLVEACRKRNVNRFILISSILVNGAAMGQLLNPAYIFLNVFGLTLVAKLQAENYIRKSGINYTIIRPGGLRNDPPTGNVVMEPEDTLYEGTISRDQVAEVAVEALAFPEASYKVVEIVSRPDAPKRSYHDLFGSIRQR. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05401 296 Pfam NAD(P)H-binding 68 264 IPR016040 -
Seca12g05401 296 PANTHER FLAVIN REDUCTASE-RELATED 47 294 - -
Seca12g05401 296 CDD SDR_a5 63 278 - -
Seca12g05401 296 Gene3D - 49 284 - -
Seca12g05401 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 62 277 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05401 Seca-Chr12 144424232 144430135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05401 61 193 Monolignol Biosynthesis Gene Families AT2G33590 33.099 1.18e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05401 - - gmx:100792523 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05401 12 144424232 144430135 Seca12g05401 12 144424232 144430135 ECH