Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05399 ATGCAAGCTCTTCAGATTCAACCACAACCCACCCTTCGCCCTTCTCCTCTCGACCCACTTCGCAAATCTTCCAATGCCGCCAAAAGGAGAGGCGCCACCGGCGGCAACTCCAAGAGGAACTTTTTCGTGTCTGCAGCCGTGACCACCGCCGCTCCGAAGCGGCAAAAGGACCCCAAGAAGCGTGTGGTGATCACCGGCATGGGTCTGGCCTCGGTGTTCGGCAACGACGTCGATCGTTACTATGATAAGCTTCTCGCTGGCGAGAGTGGGATCACCCCTATCGACCGGTTCGATGCTTCCAAGTTCCCGACCCGGTTCGGTGGTCAGATCCGTGGCTTCAGCGCCGAGGGATACATCGACGGGAAGAATGACCGGAGACTCGACGATTGCCTTCGGTACTGCATTGTCGCCGGCAAGAAGGCCCTCGAAAATGCCGACCTCGCCGCTGATAAGCACTCTAAGATCGATAAGGAACGTGCTGGTGTTCTTGTTGGGTCAGGGATGGGAGGTTTGACGGTGTTTTCTGATGGTGTTCAGGCTTTGATTGAGAAAGGGCATAGAAAGATAACACCTTTTTTCATTCCTTATGCTATTACTAACATGGGTTCGGCTTTGCTTGGAATTGATCTTGGTTTCATGGGTCCGAACTATTCCATTTCCACTGCTTGTGCTACCTCTAATTATTGCTTTTATGCTGCTGCAAACCACATTCGGAGAGGGGAGGCTGATCTGATGATAGCTGGTGGGACTGAAGCTGCTATTATTCCTATTGGGTTAGGAGGTTTTGTGGCGTGCAGAGCCCTTTCTCAGAGGAATGATGACCCTAAAACTGCTTCCAGGCCTTGGGACAAAGACCGTGATGGCTTTGTGATGGGTGAAGGTGCTGGAGTTCTGGTAATGGAGAGCCTGGAACATGCCATGAAACGAGGTGCACCTATCATTGCTGAATACTTGGGAGGTGCTGTTAACTGTGATGCTTATCACATGACTGATCCAAGATCTGATGGACTTGGTGTGTCTTCATGCATTCAGAGCAGCCTTGAAGATGCTGGTGTGTCACCTGAGGAGGTGAACTACATAAATGCACATGCAACTTCCACTCTTGCTGGTGACTTGGCAGAGATCAATGCTATTAAAAAGGTTTTCAAGGACACTTCTGGCATCAAGATTAATGCTACCAAGTCTATGATTGGGCACTGCCTTGGTGCAGCTGGGGGTTTGGAAGCTATTGCCACTGTGAAAGCCATAACAACAGGATGGCTGCATCCAACAATCAATCAATTTAATCCAGAACCTGCAGTTGATTTTGATACGGTGGCAAATGTCAAGCAGCAGCATGAAGTTAATGTTGGTAAGTTCTATTCTCTCACTCCCACTTTCTCTTTCTCTCATCTGAAAATGGACGTCACCGAGGAAGTTAGGGCAGCACACAAGCGAGAATTCGCCGATTTCTTAGATCAAGATGTGGGAAAGGGCATATACATGGACGAGATCAAAGCTCTCATCAACCATAAGCGCCGCCGCCTCATCGTCAACATCTCCGATCTCCACAACTTCCGCGACTTGGGTAACAGGATTCTGAGGAATCCAAGTGAGTACTTACAATCGTTCTGCGATGCGGTTACTGATGCGGTTCGTGCTATTGATCCCAAGTATTTGAAGGAAGGGGAACTAGTGCTTGTGGGATTTGAAGGCCCTTTTGTTTCTCGTCGAGTCACGCCCAGGGAACTTCTATCTGAATTCATAGGTTCTATGGTCTGTGTTGAGGGCATTGTCACCAAATGTTCTCTTGTAAGGCCAAAGGTTGTTAAAAGTGTTCATTTCTGCCCCACCACGGGAGACTTCACTACTCGTGAATATCGAGATATTACATCTAATATGGGTTTGCCCACAGGGTCCGTTTATCCTACAAGGGATGAAAGTGGTAACTTACTTGTGACTGAGTATGGATTGTGCAAATATAAAGATCATCAAACCTTGTCCATGCAAGAAGTTCCTGAAAATTCTGCCCCTGGTCAGCTCCCAAGAACAGTGGATATCATAGTAGAGGATGATCTCGTTGATTCTTGCAAGCCTGGAGATCGTGTGGCTATTGTGGGGACATATAAGGCTCTTCCAGGGAAAAGCAAAGGCAGTGTGAATGGAGTATTCAGGACTGTGCTCATAGCCAACAATGTTTCTCTTCTCAACAAAGAGGCTAATGCACCAATCTACAGTCCTGAAGACCTCAAAAACATAAAAAAAATAGCTGAAAGAGATGATACATTTGACCTGCTTGGTAATTCACTTGCACCTTCTATATATGGGCATTCTTGGATAAAGAAAGCAGTGGTTTTGTTGATGCTTAGCGGAGTGGAGAAGAACTTAAAGAATGGAACTCACTTGCGAGGCGACATTAACATGATGATGGTTGGTGATCCCTCTGTTGCCAAGTCTCAACTCTTAAGAGCTATTATGAATATTGCTCCCTTGGCCATATCAACAACAGGTCGGGGTTCTTCTGGGGTTGGTTTGACAGCAGCAGTTACTTCAGATCAAGAAACAGGGGAAAGAAGACTAGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGCGTTGTCTGCATTGATGAATTTGACAAAATGAATGACCAAGATCGTGTGGCTATACATGAAGTAATGGAACAGCAAACCGTAACTATTGCTAAAGCTGGTATCCATGCATCACTTAATGCTCGATGCAGTGTGGTGGCTGCTGCAAATCCCATATATGGAACTTATGATCGATCACTGACTCCGACCAAAAATATTGGACTCCCAGACTCTTTGCTTTCTCGATTTGATCTACTGTTCATTGTGTTGGATCAAATGGATCCTGATATTGATCGTCAAATATCAGAGCATGTTCTGCGCATGCATCGATTTCGTTCTGCCATTGATGGAGGTGAGGCGGCACTTGATGGGAGCTCAAGATATGGAAGAGAAGATGAAGCTGATGCGGATTCATCTGTCTTTGTCAAATACAACAGAATGCTACATGGGAAGAAAACTGAAAGAGGACGCAAACGTGATACGCTTACAATTAAGTTTCTTAAAAAGTATATCCATTATGCCAAGCATAGGATTCAACCTGAACTGACTGATGAGGCATCTGATCAAATTGCCACAGCATATGCTGAGCTCAGAAATGCAAGTTCAAATGCAAAGACTGGAGGAACGCTCCCTATAACTGCCAGAACTTTAGAAACCATAATACGTCTCTCAACTGCTCATGCCAAATTGAAGTTGAGCAGAAAGGTTTCAAAGTCTGATGTTGACGCTGCTTTGAAGGTTCTTAATTTTGCAATATATCACAAAGAACTGACAGAAATGGAGGAGCGTGAGCATGAGAGGGAGAGAGAACTGGAGAGGAAGCGTAGGGCTGATGGTGAAAATGATGATCCGGATCGTGCTCCAAGAAAGAGAAGAGGGTCAACACCAGATGCTATGGAAGTAGATGATACATCAGCACCCCAATCTGCTGCCAGTCTCACTCCTGAAAGAATCGAAGCATTTAATTCTCTATTTGGTCAGCATATGCGTGCCAACCGCTTGGATCTCATATCTATTGCAGACATAGAGGGTGTTATCAACAGGGCAGATTCCACTTACAGCTCGGCAGATATATTACTGCTATTAGAGAAATTGCAAGATGACAATAGAGTGATGATAGTTGATGGAATGGTACATATGATATCATAA 3717 0.4574 MQALQIQPQPTLRPSPLDPLRKSSNAAKRRGATGGNSKRNFFVSAAVTTAAPKRQKDPKKRVVITGMGLASVFGNDVDRYYDKLLAGESGITPIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKKALENADLAADKHSKIDKERAGVLVGSGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLGIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMIAGGTEAAIIPIGLGGFVACRALSQRNDDPKTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRSDGLGVSSCIQSSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKDTSGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPTINQFNPEPAVDFDTVANVKQQHEVNVGKFYSLTPTFSFSHLKMDVTEEVRAAHKREFADFLDQDVGKGIYMDEIKALINHKRRRLIVNISDLHNFRDLGNRILRNPSEYLQSFCDAVTDAVRAIDPKYLKEGELVLVGFEGPFVSRRVTPRELLSEFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGDFTTREYRDITSNMGLPTGSVYPTRDESGNLLVTEYGLCKYKDHQTLSMQEVPENSAPGQLPRTVDIIVEDDLVDSCKPGDRVAIVGTYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVVLLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRQISEHVLRMHRFRSAIDGGEAALDGSSRYGREDEADADSSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPELTDEASDQIATAYAELRNASSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVDAALKVLNFAIYHKELTEMEEREHERERELERKRRADGENDDPDRAPRKRRGSTPDAMEVDDTSAPQSAASLTPERIEAFNSLFGQHMRANRLDLISIADIEGVINRADSTYSSADILLLLEKLQDDNRVMIVDGMVHMIS. 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05399 1238 ProSiteProfiles Ketosynthase family 3 (KS3) domain profile. 59 473 IPR020841 -
Seca12g05399 1238 Gene3D - 737 1129 IPR027417 -
Seca12g05399 1238 SUPERFAMILY Nucleic acid-binding proteins 479 725 IPR012340 -
Seca12g05399 1238 ProSiteProfiles MCM family domain profile. 755 961 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca12g05399 1238 SUPERFAMILY Thiolase-like 60 311 IPR016039 GO:0016746
Seca12g05399 1238 Gene3D - 575 705 IPR012340 -
Seca12g05399 1238 FunFam 3-oxoacyl-[acyl-carrier-protein] synthase 2 36 465 - -
Seca12g05399 1238 Gene3D - 39 466 IPR016039 GO:0016746
Seca12g05399 1238 Pfam MCM OB domain 575 705 IPR033762 -
Seca12g05399 1238 PRINTS Mini-chromosome maintenance (MCM) protein family signature 908 920 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca12g05399 1238 PRINTS Mini-chromosome maintenance (MCM) protein family signature 935 943 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca12g05399 1238 PRINTS Mini-chromosome maintenance (MCM) protein family signature 884 897 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca12g05399 1238 PRINTS Mini-chromosome maintenance (MCM) protein family signature 856 870 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca12g05399 1238 PRINTS Mini-chromosome maintenance (MCM) protein family signature 796 811 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca12g05399 1238 Gene3D - 601 655 - -
Seca12g05399 1238 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 471 1132 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca12g05399 1238 SMART Beta-ketoacyl synthase 62 447 IPR020841 -
Seca12g05399 1238 ProSitePatterns MCM family signature. 864 872 IPR018525 GO:0003677|GO:0005524|GO:0006260
Seca12g05399 1238 CDD MCM3 758 1107 - -
Seca12g05399 1238 SMART mcm 570 1109 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca12g05399 1238 Gene3D - 468 565 - -
Seca12g05399 1238 MobiDBLite consensus disorder prediction 1 37 - -
Seca12g05399 1238 Pfam MCM P-loop domain 743 965 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca12g05399 1238 SMART AAA_5 797 950 IPR003593 GO:0016887
Seca12g05399 1238 FunFam DNA helicase 601 655 - -
Seca12g05399 1238 Pfam MCM N-terminal domain 478 550 IPR027925 -
Seca12g05399 1238 ProSitePatterns Ketosynthase family 3 (KS3) active site signature. 214 230 IPR018201 GO:0004315|GO:0006633
Seca12g05399 1238 SUPERFAMILY Thiolase-like 273 451 IPR016039 GO:0016746
Seca12g05399 1238 NCBIfam beta-ketoacyl-ACP synthase II 60 450 IPR017568 GO:0006633|GO:0016747
Seca12g05399 1238 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 647 661 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Seca12g05399 1238 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 673 685 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Seca12g05399 1238 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 1096 1111 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Seca12g05399 1238 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 957 967 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Seca12g05399 1238 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 924 934 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Seca12g05399 1238 FunFam DNA helicase 471 570 - -
Seca12g05399 1238 Pfam Beta-ketoacyl synthase, N-terminal domain 60 306 IPR014030 -
Seca12g05399 1238 Coils Coil 1110 1133 - -
Seca12g05399 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 765 1119 IPR027417 -
Seca12g05399 1238 Pfam Beta-ketoacyl synthase, C-terminal domain 315 426 IPR014031 -
Seca12g05399 1238 CDD KAS_I_II 60 451 IPR000794 -
Seca12g05399 1238 MobiDBLite consensus disorder prediction 1115 1169 - -
Seca12g05399 1238 Pfam MCM AAA-lid domain 1022 1105 IPR041562 -
Seca12g05399 1238 MobiDBLite consensus disorder prediction 1115 1154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05399 Seca-Chr12 144405857 144418205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05399 467 1041 Core DNA Replication Machinery Family AT5G46280 82.669 0.0 979
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05399 K02541 - gmx:100811545 1343.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05399 12 144405857 144418205 Seca12g05399 12 144405857 144418205 ECH