Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05396 ATGCAGACTCATGATTATTTTCTCCCGGAAGAGGTGGCACTTCCTTTGGCAGATGAAGCCATTGATACTTATATGCATGCTCCTCTTGCTCCTGCCTTTGGTGCAGTTTTACCTCCAGGTGTGAGGCAGATAACACCTTTTGAAAAATTTAAACTGCAGCCCTCTGAGGCTTGCCCTAAGAATTTCATTATTTTTGATCAGACAGATCAACGAAGCAGCATTATGTTCCATCCTGCAATGACCTACAAATTTAATAGTTCTGGCTTAAATGTTCATGCTCCTTGTACTCAAGATTTTGAAAAGAATAAAGTTAATCAAATGGAAAGAGAATTGTCATCTCCTTTTGAAGAGGATTCTGATGACATTGATGCATTGTTGAGCTTAGAAGTGGATGAACTAGAAGACTTTGATGAGGAAGAAGTAAGCACAGCAAGGACTCATGAAAATTATGAAAGTACATCTGATACTTGCTCCAGTTATTGGTCAAAATCAAGGAAGAAGAGGTTGTCATCACCTTCTGTACAAAAGTCTTCTGGAACCAGGGGATACTGCAACAATGAAAGGAAACACCGGGAGATGAAGAGGATGGTGAGGATGTTGAGAAGGATTGTGCCTGGTGGAGGTAACCAAATGGATGCTGTTGCTGTTTTAGATGAAGCTGTTAAATACCTTAAGTCTCTCAAGGTTGAAGTTGAGCAATTCGGAGTTGGACCATGA 717 0.4045 MQTHDYFLPEEVALPLADEAIDTYMHAPLAPAFGAVLPPGVRQITPFEKFKLQPSEACPKNFIIFDQTDQRSSIMFHPAMTYKFNSSGLNVHAPCTQDFEKNKVNQMERELSSPFEEDSDDIDALLSLEVDELEDFDEEEVSTARTHENYESTSDTCSSYWSKSRKKRLSSPSVQKSSGTRGYCNNERKHREMKRMVRMLRRIVPGGGNQMDAVAVLDEAVKYLKSLKVEVEQFGVGP. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05396 238 MobiDBLite consensus disorder prediction 147 182 - -
Seca12g05396 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 188 233 IPR036638 GO:0046983
Seca12g05396 238 Gene3D - 184 235 IPR036638 GO:0046983
Seca12g05396 238 MobiDBLite consensus disorder prediction 141 189 - -
Seca12g05396 238 PANTHER TRANSCRIPTION FACTOR BHLH145 24 236 IPR037546 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05396 Seca-Chr12 144376020 144376736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05396 16 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G29950 39.583 4.46e-40 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05396 - - gmx:100791998 367.466