Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05394 ATGGAGGAGAGTAAAAAGACCAGAGGAAAACAAAAGATAGAGATTAAGGAGATCAAGGAAAGTAAAATTCTTTACAATACTTTTGTAAAGCGAAAATCTGGCGTTTACAAGAAGGCTAGTGATTTATCAACACTTTGTGGGGCTAGGGTTGATATCCTCATGTTTTCGCCTTGTGGAAGACCATTCTGTTATGGGAACCCTTCTCTTCAGTCGATGACAAGGACTGGTTTAGATGAAGGAAACCCTTTAGAAGGTGGCAACGATGATCAGCTTCTTGTAGAGGATGACAAACTGGAGATCGAAGAACTCAATGAAAAAAATGATGCACTTTCTGATCAATTATATGTTGAGAAAGCAGGAGAGAAAAAACTGAAGGGGATTTTGAAGAATATGAATAGCAATGATTGGTGGGAGGCCAAAGTGCAAGATTTTAACTATGAGGAAGCCAAAGCAATGGAGGCATCTTTGACGGAACTCCGAAACAAATTAACAAAAGAACTTTCAATCAAGTGTACTGGTGAGAATACTTCTATTGGTAAGGGCTCTTCAACTTAA 555 0.3856 MEESKKTRGKQKIEIKEIKESKILYNTFVKRKSGVYKKASDLSTLCGARVDILMFSPCGRPFCYGNPSLQSMTRTGLDEGNPLEGGNDDQLLVEDDKLEIEELNEKNDALSDQLYVEKAGEKKLKGILKNMNSNDWWEAKVQDFNYEEAKAMEASLTELRNKLTKELSIKCTGENTSIGKGSST. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05394 184 PANTHER MADS BOX PROTEIN 10 165 - -
Seca12g05394 184 Coils Coil 93 113 - -
Seca12g05394 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 64 IPR002100 GO:0003677|GO:0046983
Seca12g05394 184 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Seca12g05394 184 SUPERFAMILY SRF-like 9 73 IPR036879 GO:0003677|GO:0046983
Seca12g05394 184 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Seca12g05394 184 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Seca12g05394 184 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Seca12g05394 184 Gene3D - 24 83 IPR036879 GO:0003677|GO:0046983
Seca12g05394 184 Coils Coil 146 166 - -
Seca12g05394 184 CDD MADS 9 67 - -
Seca12g05394 184 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05394 Seca-Chr12 144312854 144313408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05394 5 183 Type I MADS-box Gene Family AT5G60440 31.522 4.04e-23 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca12g05394 SRF-TF 2.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05394 - K12412 gmx:102665718 148.288