Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05393 ATGGCGAAAAAGGCTAAAGAGTCTCACTCTCACTCCGCTTCTTCGGCCTCTGCCTCTGCCTCTGCCTCCTCTGGCAAACTAATGTTGAGGATTAAATCAAATGAGGGAATGAAGAGATCTGTGCGGCAGACTAAGTCAAGGCAGAAACCCAAAGCAAAGCAAAAAAAGAACAAACAAAGGATTGATGCTAAGAAGCCAAAGAAACCTCCTACTGCCTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGCGGAGAGAAATGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTATGATATAGCAACAGAAAAACGTGCAGAATTCGATAGAGCAATGGCAGAATATAACAAGAAAATGGAAAGCGGTGAATATGAAGAAACTGATGAGGAATCAGAGTTTGATGAGTAA 465 0.4108 MAKKAKESHSHSASSASASASASSGKLMLRIKSNEGMKRSVRQTKSRQKPKAKQKKNKQRIDAKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFDRAMAEYNKKMESGEYEETDEESEFDE. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05393 154 Gene3D High mobility group box domain 60 150 IPR036910 -
Seca12g05393 154 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 36 151 IPR031061 -
Seca12g05393 154 SMART hmgende2 65 136 IPR009071 -
Seca12g05393 154 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 66 135 IPR009071 -
Seca12g05393 154 MobiDBLite consensus disorder prediction 1 70 - -
Seca12g05393 154 SUPERFAMILY HMG-box 53 144 IPR036910 -
Seca12g05393 154 MobiDBLite consensus disorder prediction 43 63 - -
Seca12g05393 154 MobiDBLite consensus disorder prediction 11 28 - -
Seca12g05393 154 Pfam HMG (high mobility group) box 66 135 IPR009071 -
Seca12g05393 154 CDD HMG-box_AtHMGB1-like 67 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05393 Seca-Chr12 144277832 144282665 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca12g05393 HMG_box 9.4e-19 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05393 - - vum:124844238 206.068