Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05389 ATGGAGGAGGAGGGCAAAAAAACCAAAGGAAAACAAAAGATAGAGATTAAGAAGATTGATAAAGCAAATGATCTTTCTAGTACTTTCGCAAACCGAAAATATGGCGTTCACAAGAAGGCTTGTGAGTTATCAACGCTTTGTGGGGCTGGGGTCAATATACTCATGTTTTCTCCATGTGGAAGATCATTCTGTTATGGGGATCCTTCTCTCCGATTGTTGACAAGGATAATTGAAGATGATGAGCACCCTTTAGAAGGTGTAAACTGTGATCAACTTGTCGAGGATCACAAGAGATCGGAGATCGATGAACTCAACAAAAAACATGATGCACTTCAAGATCAATTGTATGTTGAGAAAGCACGTGAGAAAAAACTAAAGGACATATTGAAGAAGAGGAAAAACGATGGCTGGTGGGAGGCCAAAGTGAAAGCTCTTAGTTGTGAACATGCTGAAGAAATGGAAGCAAGTCTTTTAGAATTACATGAAAAATTGTCAAATGAACTTTCAATCAAGTGTGCAGGCAATGCTTCTCATGGTATGGCCTCTTCAACTTAA 555 0.391 MEEEGKKTKGKQKIEIKKIDKANDLSSTFANRKYGVHKKACELSTLCGAGVNILMFSPCGRSFCYGDPSLRLLTRIIEDDEHPLEGVNCDQLVEDHKRSEIDELNKKHDALQDQLYVEKAREKKLKDILKKRKNDGWWEAKVKALSCEHAEEMEASLLELHEKLSNELSIKCAGNASHGMASST. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05389 184 Coils Coil 147 167 - -
Seca12g05389 184 Coils Coil 94 121 - -
Seca12g05389 184 PANTHER MADS BOX PROTEIN 11 164 - -
Seca12g05389 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 63 IPR002100 GO:0003677|GO:0046983
Seca12g05389 184 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Seca12g05389 184 Gene3D - 22 89 IPR036879 GO:0003677|GO:0046983
Seca12g05389 184 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Seca12g05389 184 SUPERFAMILY SRF-like 10 76 IPR036879 GO:0003677|GO:0046983
Seca12g05389 184 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Seca12g05389 184 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Seca12g05389 184 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05389 Seca-Chr12 144254329 144254883 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05389 6 184 Type I MADS-box Gene Family AT5G60440 35.359 8.09e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca12g05389 SRF-TF 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05389 - K12412 gmx:102665718 152.525