Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05378 ATGGAGGAGGGGGGTAAAAAAACCAAAGGAAAACAAAAGATAGAAATTAAGAAGATTGATAAAGGAAATGATCTTTCTAGTACTTTCGCAAAGCGAAAATATGGCATTCACAAGAAGGCTTGTAAGTTATCAACACTTTGTGGGGCTAGGGTTGATATACTCATGTTTTCTCCATGTGGAAGATCATTCTGTTATGGGGATCCTTCTCTCCGATTGTTGACAAGGACAATTGTAGATGATGAACACCCTTTAGAAGGTGTCAACTGTGACCAACTTGTAGAGGATCACAAGAGATCGGAGATCGACGAACTCAACAAAAAACATGATGCACTTCAAGATCAATTGCATGGTGAGAAAGCAGGCGAGAAAAATCTAAAGGACATATTGAAGCAGAGGAAAAACATGGCTGGTGGGAGGCCAAAGTGCAAGCACTTAGTTGTGAACATGCTGAGGAAATGGAAGCAAGTCTTTTAG 474 0.403 MEEGGKKTKGKQKIEIKKIDKGNDLSSTFAKRKYGIHKKACKLSTLCGARVDILMFSPCGRSFCYGDPSLRLLTRTIVDDEHPLEGVNCDQLVEDHKRSEIDELNKKHDALQDQLHGEKAGEKNLKDILKQRKNMAGGRPKCKHLVVNMLRKWKQVF. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05378 157 SUPERFAMILY SRF-like 10 80 IPR036879 GO:0003677|GO:0046983
Seca12g05378 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 63 IPR002100 GO:0003677|GO:0046983
Seca12g05378 157 Coils Coil 94 121 - -
Seca12g05378 157 PANTHER MADS BOX PROTEIN 11 127 - -
Seca12g05378 157 Gene3D - 23 85 IPR036879 GO:0003677|GO:0046983
Seca12g05378 157 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Seca12g05378 157 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Seca12g05378 157 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Seca12g05378 157 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Seca12g05378 157 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05378 Seca-Chr12 143952318 143952791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05378 6 133 Type I MADS-box Gene Family AT5G60440 38.760 2.45e-20 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca12g05378 SRF-TF 1.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05378 - K12412 ccaj:109813207 118.242