Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05374 ATGGCTGCCTCTTCCATGGCTCTTTCTTCCCCCTCTTTGGCCGGCAAGGCCGTGAAGCTGTCCCCATCAAGCTCAGAATTGGGAGCTAGCAGGTTCAGCATGAGGAAAGCCGCCACCACCACCAAGAAGGTCTCCTCCGGAAGCCCATGGTACGGCCCAGACCGTGTCAAGTACTTGGGCCCATTCTCCGGTGAGCCCCCGTCCTACTTGACCGGTGAGTTCCCCGGTGACTACGGTTGGGACACCGCTGGGCTTTCTGCTGACCCAGAGACATTTGCCAAGAACCGTGAGTTGGAGGTGATCCACTGCAGATGGGCCATGTTGGGAGCCCTGGGCTGTGTCTTCCCAGAGCTCTTGGCCCGCAACGGTGTTAAATTCGGTGAGGCCGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGTGGGCTTGACTACTTGGGTAACCCAAGCCTGATCCATGCTCAGAGCATCCTTGCCATCTGGGCTTGCCAGGTTATCTTGATGGGTGCCGTTGAAGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTGACTGACCCACTCTACCCAGGTGGCAGCTTTGACCCATTGGGCCTTGCTGACGACCCAGAGGCTTTTGCTGAATTGAAGGTGAAGGAAATCAAGAACGGTAGGTTAGCCATGTTCTCCATGTTTGGATTCTTCGTTCAGGCTATTGTGACGGGAAAGGGACCTTTGGAGAACCTTGCAGACCACCTTGCTGACCCAGTCAACAACAACGCCTGGGCCTATGCCACCAACTTTGTCCCCGGAAAGTGA 801 0.563 MAASSMALSSPSLAGKAVKLSPSSSELGASRFSMRKAATTTKKVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK. 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05374 266 Gene3D Chlorophyll a/b binding protein domain 57 259 - -
Seca12g05374 266 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 266 IPR001344 GO:0009765|GO:0016020
Seca12g05374 266 SUPERFAMILY Chlorophyll a-b binding protein 49 263 - -
Seca12g05374 266 MobiDBLite consensus disorder prediction 1 28 - -
Seca12g05374 266 Pfam Chlorophyll A-B binding protein 66 232 IPR022796 -
Seca12g05374 266 FunFam Chlorophyll a-b binding protein, chloroplastic 57 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05374 Seca-Chr12 143877939 143878739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05374 1 266 Chloroplast and Mitochondria Gene Families AT2G34430 88.060 7.99e-172 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05374 K08912 - mus:104001037 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05374 12 143877939 143878739 Seca12g05374 12 143877939 143878739 ECH