Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05369 ATGTCTAATGAACCTAAACAACTTTACTACCACAACCTTGTTCTTGATCATAATCAGCAGAGCATAGAAGGATCTACCATGTATTGTGAAAAGCAATTTTCTTCCTTTCCTTCAGGTTCATCTGCATATGATTCATCACAAGCCTTTGATCCATCTTACATGAGTTTCACTGAATGTTTACAAGGAGGCATGGACTACAATTCACTTGCAAGTTCTTTTGGCTTATCTCCTTCCTCATCAGAGGTATTTTCATCTATTGAAGGAAACCAAAAGCCTTGTGCAGAAACAGGAGATAATAATCATGTAGTAGTTGGTGGCAGTGATCAAACCCTTGCAACCCTTAACTCATCTATCTCTTCCTCATCCTCTGAAGCTGGGGCAGAGGAAGATTCAGGAAAGAGAAAGAAAGATAACCAAGTGAAAGAAGAAGAAGAAGAAGAAGGACAAGAAAACTCTAAGAATGGAAAATCCAGGAAGAACAAGGATAAGAAGAAAGGTGAGAAGAAGCAGAAAGAGCCAAGATTTGCCTTCATGACTAAGAGTGAGGTTGATCATTTAGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCTGTTAAGAATAGTCCATACCCTAGGAGCTACTACAGGTGCACAACACAGAAGTGTACAGTGAAGAAACGCGTGGAGAGGTCATATGAAGACCCAACCACTGTGATAACAACATATGAAGGTCAGCATAACCATCCGGTCCCCACATCGCTAAGAGGCAATGCGGCTCATGGAATGTTCACACCATCTTTGTTAACTACACCGACTCCACTCACACTTGCCTCAAACTTCCCACAAGATCTCTTTTTGCAGATACATAATAATAATACTTCTTCCCTCAATATCACTCATTCAACAAACATTACTACAACTCCTACACCTTCCTCATTTTACTCACACTCACACAACAACATTAACAACTCTCTTCTTCTTCATCACCAGCTTCCTCATGAATATGGTCTCCTTCAAGACATTGTCCCTTCGATGTTCCTCAACAAGACCCATGACAATTGA 1047 0.4031 MSNEPKQLYYHNLVLDHNQQSIEGSTMYCEKQFSSFPSGSSAYDSSQAFDPSYMSFTECLQGGMDYNSLASSFGLSPSSSEVFSSIEGNQKPCAETGDNNHVVVGGSDQTLATLNSSISSSSSEAGAEEDSGKRKKDNQVKEEEEEEGQENSKNGKSRKNKDKKKGEKKQKEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSYEDPTTVITTYEGQHNHPVPTSLRGNAAHGMFTPSLLTTPTPLTLASNFPQDLFLQIHNNNTSSLNITHSTNITTTPTPSSFYSHSHNNINNSLLLHHQLPHEYGLLQDIVPSMFLNKTHDN. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05369 348 MobiDBLite consensus disorder prediction 79 126 - -
Seca12g05369 348 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 79 295 IPR044810 GO:0003700
Seca12g05369 348 Pfam WRKY DNA -binding domain 187 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g05369 348 SMART WRKY_cls 186 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g05369 348 SUPERFAMILY WRKY DNA-binding domain 178 246 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g05369 348 MobiDBLite consensus disorder prediction 127 157 - -
Seca12g05369 348 MobiDBLite consensus disorder prediction 79 177 - -
Seca12g05369 348 ProSiteProfiles WRKY domain profile. 181 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g05369 348 FunFam WRKY transcription factor 57 172 246 - -
Seca12g05369 348 Gene3D WRKY domain 170 247 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05369 Seca-Chr12 143769896 143772069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05369 34 344 WRKY Transcription Factor Family AT4G18170 48.742 5.02e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g05369 WRKY 2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05369 - - gmx:100787050 415.231