Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05364 ATGGAAAAGGAGCCTTTGCTCCCATATTTCAGCCCCAGAAAGAGGCCTCCTCTCTCATTGCCTCCTCACCTTTGTCCATTACCAGAGAATGATGAGATCGTTCTTCCTATGACCCCTATGGAGTTCAAGGATCGCCTCATCTTTGGTCCTTCTCCTGCTTCCACAGGGGAATACCCTTCAGCTTTTGCTGAGGCCTTAACACTTTCCCTTAATTCCCCAAAATCTTCTTCTTCCTCTTCACATGACTTTGCATCTCCAGCACTCTTTGATACACCACAACAACAGTCTCAACAACAACAACAACTCTCATCTTGGCTCCTTGACCCTAATTATTCATGGCGCAAAACCAATCTCCATCGCTCAAAAACTGCACCAGCTATGGCCGTGATCAGTGATTTCAATCACCAACCTGCTGTGAAAAGACCCCAATTTGGTAGCCAGTCTATTGTTCGTCAGGCTGTTATTCTCCTTGTTCTTTATTTGGCATTAGGGGTGTTAATTTATTGGTACAATCGCCATAATTTTACAGCAATTGAGACTCATCCTATAGTGGATGCATTATATTTTTGTATAGTGACAATGTGCACAATAGGATATGGTGACATTACTCCCAATAGTACAGCAACGAAGGTTTTCTCTATATTGTTTGTGTTGGTGGGTTTTGGTTTTATAGACATATTGCTCAGTGGGATGGTTAGCTATGTTCTTGATTTACAGGAGAATCATTTGTTGAGGGCAGTGAAGGGCAGGGGGGAAAAGGATGGGAGGTCATATATAGTTGATGTGAAGAAAGGGAGGATGAGGATTAGGATGAAGGTGGCATTGGCATTGGGGGTTGTGGTACTTTGTATTGGAATTGGTGTTGTGTTTATGCATTTTATGGAAAAGCTTGGATGGGTAGATTCTTTTTATCTTTCAGTTATGTCTGTTACTACTGTTGGGTATGGGGACCATGCTTTTAAGACCTTGCATGGTCGTATCTTTGCTGCAATTTGGTTGCTTGTGTCAACACTTGCAGTGGCCAGAGCATTCCTCTATTTGGCTGAGGCAAGAGTGGATAAGCGGCATAGGAGGATGGCAAAGTGGATTCTTGGTCAGGATATGACTGTGTCTGAGTTTCTTGCTGCAGACATAGACAATAATGGATTTGTGAGTAAATCAGAATATGTTATATACAAGCTCAAGGAGATGGGAAAAGTATCCGAGAAGGACATCATGCAGGTTAGTGAGAAGTTTGATAGGCTAGATGCCGGTAACTGCGGAAAAATAACACTTGCTGATCTCATGGAGAGTCATAATTGA 1302 0.4255 MEKEPLLPYFSPRKRPPLSLPPHLCPLPENDEIVLPMTPMEFKDRLIFGPSPASTGEYPSAFAEALTLSLNSPKSSSSSSHDFASPALFDTPQQQSQQQQQLSSWLLDPNYSWRKTNLHRSKTAPAMAVISDFNHQPAVKRPQFGSQSIVRQAVILLVLYLALGVLIYWYNRHNFTAIETHPIVDALYFCIVTMCTIGYGDITPNSTATKVFSILFVLVGFGFIDILLSGMVSYVLDLQENHLLRAVKGRGEKDGRSYIVDVKKGRMRIRMKVALALGVVVLCIGIGVVFMHFMEKLGWVDSFYLSVMSVTTVGYGDHAFKTLHGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRRMAKWILGQDMTVSEFLAADIDNNGFVSKSEYVIYKLKEMGKVSEKDIMQVSEKFDRLDAGNCGKITLADLMESHN. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05364 433 SUPERFAMILY EF-hand 369 430 IPR011992 -
Seca12g05364 433 Gene3D - 341 433 - -
Seca12g05364 433 FunFam Two-pore potassium channel 3 256 370 - -
Seca12g05364 433 SUPERFAMILY Voltage-gated potassium channels 264 369 - -
Seca12g05364 433 Pfam Ion channel 155 235 IPR013099 -
Seca12g05364 433 Pfam Ion channel 279 348 IPR013099 -
Seca12g05364 433 PRINTS Two pore domain K+ channel signature 192 220 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca12g05364 433 PRINTS Two pore domain K+ channel signature 311 320 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca12g05364 433 SUPERFAMILY Voltage-gated potassium channels 146 235 - -
Seca12g05364 433 Gene3D - 138 254 - -
Seca12g05364 433 MobiDBLite consensus disorder prediction 1 23 - -
Seca12g05364 433 FunFam Two-pore potassium channel 5 138 248 - -
Seca12g05364 433 Gene3D - 278 340 - -
Seca12g05364 433 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 154 407 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca12g05364 433 ProSitePatterns EF-hand calcium-binding domain. 377 389 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05364 Seca-Chr12 143699018 143706634 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05364 4 430 Ion Channels AT4G18160 60.959 2.12e-179 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05364 K05389 - gmx:100804249 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05364 12 143699018 143706634 Seca12g05364 12 143699018 143706634 ECH