LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g05363	ATGGATGAGCCTCTGCTCCCATATGGCAGCCCCAGAACGAAGCCTCCGCCATTGCCATCCCAGCTTTGTGACGATATCATTCTTCCTATTTCCCCGTTGGAGTTCAAGGATCGCCTGATCTTTGGCCCTTCTTCTGCTTCCTCAGGGGACCCTTCACCTTTGGTTGAGGCCTTAACACTTGCCCCTAATTTCCCAAAATCTTCTTCTTACCACTCTGCATTATCATCACTCTTTCACGCACCACAACAACACTCCTCTTATCTTATTGATCCCAATTATCCATGGCGCAAAACAAATGTCCTTCGTTCCAAAACTGCACCACCTGCAGGTATGGCAGAGATTAACGATTTCAATCACCAACCCGTTGAGCCAAGACCCCAAGTTGGTAGACACTCTATTGTTCACCAGGCCATTATTCTTCTTGTTCTTTATTTGGCTCTAGGGATGATCATTTATTGGTTGAATCGTCCTAATTTTTTAGCAACTGAGACTCATCCTATAGTGGACGCATTATATTTTTGTATAGTGACAATGTGCACAATAGGCTATGGTGACATCACTCCCAATAGTACAACAACAAAGCTTTCCTCTATGTTGTTTGTATTGGTGGGTTTTGGTTTTATTGGCATATTGCTAAGTGGGATGGTTAATTATGTTCTTGATTTGCAGGAGAACCATTTGTTGAGGGCAGTGAAGGGTAGGGGTACAGAAAAAAATGGGATGTCATATATAATTGATGTGAAGAAAGGGAGGATGAGGATTAGGATAAAGGTGGCATTGGCATTGGGGGTTGTGGTACTTTGTATTGGAGTTGGTGTTGGAGTTATGCACTTTGTGGAAAGGCTTGGATGGTTAGATTCTTTTTATCTTTCTGTTATGTCTGTGACAACTGTTGGGTATGGCGACCATGCATTCAAGACCTTGCATGGTCGTATCTTTGCTGCAATTTGGTTGCTTGTGTCAACACTTGCAGTGGCCCGGGCATTCCTCTATTTTGCTGAGGCAAGAGTGGATAAGAGGCATAGGAGTTTCACAAAGTGGATTCTTGGCCGGGATATGACTATTTCTGAGTTTGTTGCTGCAGACATAGACAATAATGGGTTTGTGAGTAAATCAGAATATGTTATATACAAGCTCAAGGAGATGGGAAAAATCTCTGAGAATGACATTATGCAGATTAGTGAGAAGTTTGATAGACTAGATGCTGGCAAGTATGGAAAAATAACACTTGCTGATCTTGTGGAGGGTCATAATTGA	1257	0.4248	MDEPLLPYGSPRTKPPPLPSQLCDDIILPISPLEFKDRLIFGPSSASSGDPSPLVEALTLAPNFPKSSSYHSALSSLFHAPQQHSSYLIDPNYPWRKTNVLRSKTAPPAGMAEINDFNHQPVEPRPQVGRHSIVHQAIILLVLYLALGMIIYWLNRPNFLATETHPIVDALYFCIVTMCTIGYGDITPNSTTTKLSSMLFVLVGFGFIGILLSGMVNYVLDLQENHLLRAVKGRGTEKNGMSYIIDVKKGRMRIRIKVALALGVVVLCIGVGVGVMHFVERLGWLDSFYLSVMSVTTVGYGDHAFKTLHGRIFAAIWLLVSTLAVARAFLYFAEARVDKRHRSFTKWILGRDMTISEFVAADIDNNGFVSKSEYVIYKLKEMGKISENDIMQISEKFDRLDAGKYGKITLADLVEGHN.	419

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g05363	418	Pfam	Ion channel	139	219	IPR013099	-
	Seca12g05363	418	Pfam	Ion channel	264	334	IPR013099	-
	Seca12g05363	418	SUPERFAMILY	Voltage-gated potassium channels	248	355	-	-
	Seca12g05363	418	ProSitePatterns	EF-hand calcium-binding domain.	362	374	IPR018247	-
	Seca12g05363	418	FunFam	Two-pore potassium channel 3	241	355	-	-
	Seca12g05363	418	Gene3D	-	263	324	-	-
	Seca12g05363	418	Gene3D	-	325	418	-	-
	Seca12g05363	418	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	166	392	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Seca12g05363	418	Gene3D	-	130	230	-	-
	Seca12g05363	418	PRINTS	Two pore domain K+ channel signature	176	204	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Seca12g05363	418	PRINTS	Two pore domain K+ channel signature	296	305	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Seca12g05363	418	SUPERFAMILY	Voltage-gated potassium channels	133	219	-	-
	Seca12g05363	418	SUPERFAMILY	EF-hand	357	414	IPR011992	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g05363	Seca-Chr12	143680750	143684689	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g05363	3	416	Ion Channels	AT4G18160	59.579	2.17e-167	475

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g05363	K05389		-	gmx:100804249	592.038