Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05355 ATGAAGCACTTCTATGGCTTATGTGACAGAGGGGAACGAATCAACCGTTTCAATGAATGGAGAGTCAGCAAGGGGAAGAATGCGTCTCAGATTGGGGGATTAGGGTTCATGGAGATGATGAAAGAATCGGTGAGGAAGAAGTGTTTTGCTTTCTGTTTTAATTTGGGGGAATTTGGGGGAATAGGGCAAGCAAATTACTTTCTAATTTTAATCATTGAGCTTCACTTTGCTGTAAAGCACTCACTTCACTTAGCTTATCTGTTCTCTTTCATTCCTTTCTTCCTTCCATCAAAGGAAGATATGGATTCAGTAGCTTCTGGGTTGTTGGCCACTATGTTGGACAGGCTAGCAACCACTGCTTTTAGGAACATTTCCATGGCAAGGGGTCTCCAAGTTGATGTGGGCACCCTCCAAGAATCTCTCACAGTCATCGGTGCCTTCATTATGGATGCTGAGAACAAGCAAACCCAAAGCCAATCCATATTGCTCTGGCTGCAACAACTCAAAGAAGCTTTCTTTGATGCCAGTGACATCTTGGATGAGATTGAGTGTGAGGCTCTCAGGAATCAAGTTGTGAACAGACATGGAGGCTTCACCACAAAGGTACAACGTTTTCTCTCATCTTCTAACCCTTTTGTATTTCGTCTTAAGATGGCCCACAAGATCAAGGACATCAAGGACAGGATAGATGAAATAACTACTCTTAGGATGAAATTGGGTCTCTCAGTGATCCATGAAAGTAGTCCTAGTGTGTCACTCCATCAGAACATGGCTTGGAGAGAGACCCATTCTTATGTTAGGCCTTCCCTTGTGATTGGTAGAGATGAGGAGAAAGAAAAGATCATTGGGTCTTTGATGGTTCCACCATCTGATGATGATGGAATTGATGTTATTCCTATTGTTGGAATTGGAGGATTGGGGAAGACCACACTTACCCAATTAGTGTACAATGATGAAAGGGTCATTGAGCATTTTAATTTGCGTATGTGGGTGTTTGTTTCTGATGATTTTGATGTTAAGAGGCTAGTACTAGAGATTATTAAAGCTATGCAAGGAACAGATGTAGTAGATGCTCACAACAAAAGTTTTGATCAATTACAAAATCTACTTCGTGAGGGATTATGTGGGAGAAAATTTCTACTTGTTCTAGATGACGTCTGGAATGAAGATTATAGAGAATGGCTTCAATTGAAAAATCTTTTAATAGGTACTCAAGATAAAGATAACAAATTTGGTAACAAGATTATCACAACCACTCGTAGTGACAAGGTTGTTTCAATAATGGGGAATGTTTATAAACACAACTTGAAATATCTCCCTGAAGAAGATTGTTTAAAGCTATTTGTTAAGTGTGCATTTCCAGCAGGAGAGGAGAAAAAACACCCAAGGCTTTTAGAAATTGGGAAGGATATTGCTAGAAAGTGCCAAGGGTTGCCCTTGGCAGTGGTAAGTTTAGGGTACCTGCTTTACTCAAAACCTGGAGAAAATGAGTGGAAGAAAATAAGAGATAGTGAAATTTGGAAGATGAACCAACAAGATGATGGCATTTTGGCTGCATTGAAACTAAGCTATAATCACTTGCCATCTAGATTGAAACAGTGTTTCTCTTATTGTTCAATATTTCCTAAGGGTTATCACTATACTAATCTAGAGCTGATTTCATTTTGGATGGCACATGGACTACTACAAACCAAAGATGAAGATGAAGAGCCGGAAGAACTTGGGGAGATTTATATTAAGGAGTTGGTGTCAAGATCTTTCTTTGAAGCTGTCCCTGAAAATCTAGTAGTTATTGATGGTCTTATTTTTGAAGAACTTGAGCTTCTTGGCATCTCTTTTTTCAAAATGCATGATCTTGTTCATGACCTTGCTGTGTCCACAATGCCAAATGAAAGGGCAGTAGTAAAATTTAATTCAACATATGTTAAAGAAAAGGTGCAACATATATCATTTTCAGACAGTGGTGAAGGAGTTCCTACTTTTGGTAAAGTATTGAATAAGGTTCGAACCATTGGATTCTGGCATGTAGGTCAAAAAGCATATGCAATTACTGAGCCATTTGTCAGATGGTTCTCCAAGGAATTCAAGTACCTCAGGGTGTTGAATATACAAGGTTCAAATTTTCAGTATTTGCCAGATTGTTTCAACAAAATGAAGCATTTGAGGTATCTTGATCTAAGCTATTGCCAGAGGATGAAAAAACTCCCAGATTCCATATGCAAGCTCCAAAGCCTAGAGGTTTTAAATCTCTGTAGATGTGTAGCACTCAAACATATTCCCAAAAAATTTAGGAATCTTGCCAGCCTTCGGATTTTGTGGATTACCACACAAGACACAGATTTGTCTTATATAGGTATTGGGAGCTTGAAATATCTACAAACTTTAATTTTGTGGAATTGTGAATATTTGGTTTTTCTTCCACGTGATTTGAGGCACTTGACTGCTTTAAAGAGGCTGACTATTGAGTCTTGTGATGAGGTGATTAGTTTTGAGGATGAAGGAGAAGAAGAAAATGGAAACTACTCCTTGAAACTCGAACGATTTTCAATTGACAAATTACCCAATTTGGCAGCATTACCAGGTTGGCTTAGAAGATCTGGTAAAACTTTGAGATACATGGGTCTTTCAGAATGTCCAAGCTTAACAGCATTGCCAGAATGGTTGCCAAACCTAACATCACTTGAGACTCTTCTCATTGGTGATTGTCCAAACTTGACACTACCCCAGCGTATGGATCTTCTTCAAAGCCTTCAGAACTTGAAGATATATGGATGTCCTCAGCTAGTTGAGAGATGCAAACGATATACAGGCCTTGACTGGCCCAAAATAGCTCATATCCCAAATGTTGATGCCCATTCTAACTTGAAGAAGAGAAAGTCTACCTTGATTACTGATGGGAATCCTGCTGCATTTAAGCAGCCAGAAGATATCTTTACTAGAGAAGAAAAATATAGTGAGGATGAGGATAACAATGATGCTGGAGGAGATGATGATGATGTGATTGATAACAATGATGCTGGTGACAACACAGATGAAGAAAAAGCTGGAGGAGATGATAATAAGATTGATGATCATCAAGAAGAAGCAGAGTACTTACTAGGAGATGAGGGTCCAACAACTGCTTCAGAGGAGGAATTTCACAAAGGTCTGCTCACAAAAGATGGAGATGAAAAGAATAAGCTTTCTACTCGACATTTCAGCCATGGATGTTACTTGGTTCAAGGAAAGATGGACCATGGAATGGAAGACTATGTTTTTGCTCAACACAAGAAGCTTAATGGTTATGACTTAGGACTGTATGCAATATTTGATGGTCACTCAGGTCGTGATGTAGCAAAATACTTGCAAAGCCATCTATTTGAAAACATACTAAGTGAGCCTGATTTCTGGAGAAATCCAGTGCATGCAGTTAAGAAAGCATGTAAAGCTACAGATGATGAGATTTTAGAAAGCATAGCTGATTCACATGGAGGATCAACAGCTGTTGCAGCAATACTAATTAATGGAGTAAAACTAGTGGTAGTCAATGTTGGTGATTCTAGAGCAATATCATGTAAAAATGGTCTAGCAAAACAAATTACTGTGGATCATGATCCAGAGAAGGAGAAAGATCTTGTTGAGAGCAGAGGAGGTTTTGTGTCCAAGAAACCTGGGAGTGTTCCAAGAGTAGATGGCCAATTAGCAATGACAAGAGCATTTGGAGATGGAAAACTTAAGGAGCACATTACTGCAGAACCAGATGTGATGATTCAGAAGATTGGTGAGGACACTGAATTCATCATTTTGGCAAGTGATGGTCTGTGGAAGTGGAGCTTCAGAGACATTGCTGACCAGAAAGTAGTAAAATTATCCTTGGTTTCTTCTAATTACACATCGGAACCATAG 3885 0.3907 MKHFYGLCDRGERINRFNEWRVSKGKNASQIGGLGFMEMMKESVRKKCFAFCFNLGEFGGIGQANYFLILIIELHFAVKHSLHLAYLFSFIPFFLPSKEDMDSVASGLLATMLDRLATTAFRNISMARGLQVDVGTLQESLTVIGAFIMDAENKQTQSQSILLWLQQLKEAFFDASDILDEIECEALRNQVVNRHGGFTTKVQRFLSSSNPFVFRLKMAHKIKDIKDRIDEITTLRMKLGLSVIHESSPSVSLHQNMAWRETHSYVRPSLVIGRDEEKEKIIGSLMVPPSDDDGIDVIPIVGIGGLGKTTLTQLVYNDERVIEHFNLRMWVFVSDDFDVKRLVLEIIKAMQGTDVVDAHNKSFDQLQNLLREGLCGRKFLLVLDDVWNEDYREWLQLKNLLIGTQDKDNKFGNKIITTTRSDKVVSIMGNVYKHNLKYLPEEDCLKLFVKCAFPAGEEKKHPRLLEIGKDIARKCQGLPLAVVSLGYLLYSKPGENEWKKIRDSEIWKMNQQDDGILAALKLSYNHLPSRLKQCFSYCSIFPKGYHYTNLELISFWMAHGLLQTKDEDEEPEELGEIYIKELVSRSFFEAVPENLVVIDGLIFEELELLGISFFKMHDLVHDLAVSTMPNERAVVKFNSTYVKEKVQHISFSDSGEGVPTFGKVLNKVRTIGFWHVGQKAYAITEPFVRWFSKEFKYLRVLNIQGSNFQYLPDCFNKMKHLRYLDLSYCQRMKKLPDSICKLQSLEVLNLCRCVALKHIPKKFRNLASLRILWITTQDTDLSYIGIGSLKYLQTLILWNCEYLVFLPRDLRHLTALKRLTIESCDEVISFEDEGEEENGNYSLKLERFSIDKLPNLAALPGWLRRSGKTLRYMGLSECPSLTALPEWLPNLTSLETLLIGDCPNLTLPQRMDLLQSLQNLKIYGCPQLVERCKRYTGLDWPKIAHIPNVDAHSNLKKRKSTLITDGNPAAFKQPEDIFTREEKYSEDEDNNDAGGDDDDVIDNNDAGDNTDEEKAGGDDNKIDDHQEEAEYLLGDEGPTTASEEEFHKGLLTKDGDEKNKLSTRHFSHGCYLVQGKMDHGMEDYVFAQHKKLNGYDLGLYAIFDGHSGRDVAKYLQSHLFENILSEPDFWRNPVHAVKKACKATDDEILESIADSHGGSTAVAAILINGVKLVVVNVGDSRAISCKNGLAKQITVDHDPEKEKDLVESRGGFVSKKPGSVPRVDGQLAMTRAFGDGKLKEHITAEPDVMIQKIGEDTEFIILASDGLWKWSFRDIADQKVVKLSLVSSNYTSEP. 1295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05355 1294 SUPERFAMILY L domain-like 615 940 - -
Seca12g05355 1294 MobiDBLite consensus disorder prediction 982 1023 - -
Seca12g05355 1294 Pfam Protein phosphatase 2C 1079 1269 IPR001932 -
Seca12g05355 1294 SMART PP2C_4 1060 1286 IPR001932 -
Seca12g05355 1294 SUPERFAMILY PP2C-like 1063 1275 IPR036457 -
Seca12g05355 1294 Pfam Rx N-terminal domain 109 195 IPR041118 -
Seca12g05355 1294 MobiDBLite consensus disorder prediction 988 1006 - -
Seca12g05355 1294 ProSiteProfiles PPM-type phosphatase domain profile. 1067 1294 IPR001932 -
Seca12g05355 1294 CDD PP2Cc 1066 1277 IPR001932 -
Seca12g05355 1294 PANTHER DISEASE RESISTANCE PROTEIN RP 158 928 IPR044974 GO:0006952
Seca12g05355 1294 Gene3D Ribonuclease Inhibitor 663 957 IPR032675 -
Seca12g05355 1294 Pfam NB-ARC domain 275 525 IPR002182 GO:0043531
Seca12g05355 1294 Gene3D - 438 528 IPR042197 -
Seca12g05355 1294 Gene3D - 1061 1290 IPR036457 -
Seca12g05355 1294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 259 538 IPR027417 -
Seca12g05355 1294 Gene3D - 256 433 IPR027417 -
Seca12g05355 1294 MobiDBLite consensus disorder prediction 1007 1023 - -
Seca12g05355 1294 FunFam Probable disease resistance protein At1g61300 253 433 - -
Seca12g05355 1294 Gene3D - 109 223 - -
Seca12g05355 1294 PRINTS Disease resistance protein signature 373 387 - -
Seca12g05355 1294 PRINTS Disease resistance protein signature 475 489 - -
Seca12g05355 1294 PRINTS Disease resistance protein signature 716 732 - -
Seca12g05355 1294 PRINTS Disease resistance protein signature 297 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05355 Seca-Chr12 143563327 143576402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05355 1064 1271 PP2C-type Phosphatase Gene Family AT2G34740 66.507 2.83e-91 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05355 - - mtr:25493373 1254.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05355 12 143563327 143576402 Seca12g05355 12 143563327 143576402 ECH