Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05352 ATGAAGGTGGATAGGAAAAAAGAGTATAGGCCAATAACTCGTGTGAAGTGTGAAGCTAAGCTAAGAATTCGCTTAGATTATAAGACATCTAAATGGAAGGTGGTATCTTTTGTGGAGACTCATAATCATGAGCTTCCCCCATACAGTTATGTGCATTTATTTCCTACTTATAGAGGCCTAACTGATGCGGATAAAGCTCAAGTAGATAGGTTGCACGCATATGGTGTTAGAACATGCCACATAATGGGATACATGTTAGATCAAAAGGGGGGATATGCTTCGCTTGGGTTTTGTAGAAAGGATTTGTATAATTATATTGAACAACAAAAACTTGAAAAGATTAAAGATGGGGATGCACATGCATCCTTATGTTATATACAAGCAAAGGCAAACAATGATCCCACACTTCGTTGTAGTTTCCTTGCTACAGATGATGGTTGTTTGAGAAATTTATTTTGGGAAGATGGGGGCAGTCGGGCTGATTATTACTGCTTTGGAGATGTTCTTGCATTTGACACAACTTATAGGAAAAACCGATATAACAAACCTTTGGTTATATTTTCTGGTTGTAATCATCATGGTCAGACAGTTATTTTTTGGTTGTGCGTTGGTTGCCGATGA 621 0.3784 MKVDRKKEYRPITRVKCEAKLRIRLDYKTSKWKVVSFVETHNHELPPYSYVHLFPTYRGLTDADKAQVDRLHAYGVRTCHIMGYMLDQKGGYASLGFCRKDLYNYIEQQKLEKIKDGDAHASLCYIQAKANNDPTLRCSFLATDDGCLRNLFWEDGGSRADYYCFGDVLAFDTTYRKNRYNKPLVIFSGCNHHGQTVIFWLCVGCR. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05352 206 PANTHER OS01G0519700 PROTEIN 4 188 - -
Seca12g05352 206 Pfam FAR1 DNA-binding domain 5 45 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05352 Seca-Chr12 143543519 143544139 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g05352 FAR1 6.7e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05352 - - ccaj:109792835 281.567