Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05349 ATGCTAGAGATCTTGGCATTGAACCACAATCTCATTGAAGGTACCATTCCCCCTGAAGTTGGCAAAATGACACACTTGAGGATTTTATCAATTAGTTCAAACAGACTTAATGGAACTATTCCTCAAACGATTTCTAACCTCTCTTCCCTTGAGAAAATCAGTTTATCTTATAACTCTCTGTCAGGAGGCATTCCAAAGGAGATTGGTGAGCTTCCACAACTAAGAATAATGTATCTTGGAAATAATCCACTCAGTGGAGAGATTCCATCCTCTCTTTTTAACATATCTTCAATGAGAGTACTCAGCCTCGAAGAAAACAACTTGAACGGTAGCCTCACAGAAGAGATGTTTCGTCAGCTACTACTACTAGAAATCTTGGCTTTGGATAATAATCAATTTGTGGGAAGCATTCCAAAATCTATTAGCAATTGCACAATGCTTCAAGAATTACATCTTGGTGACAATTCCTTCACTGGAAGTAACCATTTAAAGGGATCTATTCCCTCAAATATTTTTAACATGTCATTACTGAGTTACTTGTTTCTGGCAAACAATTCCCTCTCAGGATTTCTACCATCACATATTAGCCTAAAAAACTTGGAAGAACTATACTTGTATGGCAACCAACTTCATGGAAACATTCCAAGTAGCATATCCAATGCTTCTAAGCTTAACTATCTGGATTTGAGTCACAATAAGTTCAATGGAGTTATACCAAATGCTCTTGTGAATTTGAGAAACCTTCGGTGGCTTGATGTAGGATACAATAATTTAACTACTGGTGCTTCCACTATTGAATTAAGCTTTCCCAGTTCTTTGAATTTTCTTCAAATATCAGGAAATCCAATACATGCACATATTTCTAAATTAATTGGAAATATGACAAATTTGGAACAGTTCATTGCTGATGCTTGCAGTATTAATGGTAAAATTCCATTGGAAATTGGAAATTTGAGCCACCTGTTTGCACTGAGCTTGTTTAATAATGATTTAAGTGGATCAATTCCAAAAACAGTTGATGGTTTGCAGTCTCTTCAATATTTGAATCTTGGAAACAACCAACTTCAAGGTACCATCATTGATGAACTTTGTGTATTCAATCGACTGAGTGAATTGTATATAAATGAAAATATGTTGATTTCTGGAGTGATCCCTGGATGCTTTGGTAATCTCACTTCTCTAAGAAAGCTTTACTTGAACTCTAACAAATTAAATCAGGTGCCTTATTCTCTTTGGAGTCTCAAAGACATTCTGGAGGTAAACTTATCAGACAATGCTTTAACTGGATTTCTTCCACTTGATATTGGAAATTTAAATGCAGTTATATTGTTGGATCTATCAATGAATCAGATTTCAGGAAGCATTCCTAGTGACTTTGCTAGATTGCAAAATTTACAAATTCTCAACTTAGCACATAATAAATTGCTAGGATTTAATAAAGCACTTTGTGGAAATGCTCAACTACTAGTCCCACCATGCAGTAAAATGAAGAGGAAAAGCTCAAACATAAATATGTTTTTCATCAAATACATATTGCTTGTTATATTGTCAACCATTTTGGTTGTTATATGTATACTTCTAATAAGGCGTCAAAGAAAGAAAGATGGTGATCCTATTGAAGTAATCTTACCAACAACAAGAATGATTTCCTACCATGAACTTTCACAGGCAACCAATGGGTTTGATGAGAGTAATCTACTTGGTAAGGGTGGTTTTGGCTCTGTGTTCAAAGGTATACTTCCAAATGGGATGGTTGTTGCAGTCAAATTATTTAATTTGGAGTTAGAATTTGGATCAAAGAGCTTTAATGTAGAATGTGAAGCAATGCGTAATTTGCGTCATCGAAATCTCATCAAGATCATCAGTAGTTGTTCAAATTTTGATTACAGGCTTTTAGTAATGGAATTCATGCCCAAGGGGAGCCTTGAAAGGTGGTTGTATTCTCATAACTATTACTTGGACTTCTTGAAAAGGCTAAATATAATGATAGATGTAGCATCTGCATTGGATTATATGCATCATGATTCTTCACCAGTTGTGGTTCACTGTGATGTAAAGCCTAGTAATGTCTTATTGGATGAAAACATGGTTGCTCATTTAAGTGACTTTGGCATTGCCAAACTTCTAAATGATGAACAATCCAAAGAATATACCAAGACTATGGCTACACTTGGCTACATTGCTCCAGAGTATGGATCCAAGGGGACTATCTCTACAAAAGGAGATGTTTACAGTTTTGGAATTATGTTAATGGAAACATTCACAAGAAAGAAGCCAACAGATGAGTTGTTTGTTGATGGATTGAACATGAAAGGTTGGATTAGTGAATCATTACCCCATGCAATCACTCAAATTGTGGATTCCAATTTGTTACAAGATGAAGGTCACTGTATTGATGATATAACAACATCTATATCATCTATTTTCAGATTGGCCTTGAATTGTTGTGCAGATTTACCTGAAGAACGAATGAATATGACAAATGTTGTTGCATCATTAAACCAAAACAAGGTCATGTATTTGTCAGAAAATTAA 2535 0.3499 MLEILALNHNLIEGTIPPEVGKMTHLRILSISSNRLNGTIPQTISNLSSLEKISLSYNSLSGGIPKEIGELPQLRIMYLGNNPLSGEIPSSLFNISSMRVLSLEENNLNGSLTEEMFRQLLLLEILALDNNQFVGSIPKSISNCTMLQELHLGDNSFTGSNHLKGSIPSNIFNMSLLSYLFLANNSLSGFLPSHISLKNLEELYLYGNQLHGNIPSSISNASKLNYLDLSHNKFNGVIPNALVNLRNLRWLDVGYNNLTTGASTIELSFPSSLNFLQISGNPIHAHISKLIGNMTNLEQFIADACSINGKIPLEIGNLSHLFALSLFNNDLSGSIPKTVDGLQSLQYLNLGNNQLQGTIIDELCVFNRLSELYINENMLISGVIPGCFGNLTSLRKLYLNSNKLNQVPYSLWSLKDILEVNLSDNALTGFLPLDIGNLNAVILLDLSMNQISGSIPSDFARLQNLQILNLAHNKLLGFNKALCGNAQLLVPPCSKMKRKSSNINMFFIKYILLVILSTILVVICILLIRRQRKKDGDPIEVILPTTRMISYHELSQATNGFDESNLLGKGGFGSVFKGILPNGMVVAVKLFNLELEFGSKSFNVECEAMRNLRHRNLIKIISSCSNFDYRLLVMEFMPKGSLERWLYSHNYYLDFLKRLNIMIDVASALDYMHHDSSPVVVHCDVKPSNVLLDENMVAHLSDFGIAKLLNDEQSKEYTKTMATLGYIAPEYGSKGTISTKGDVYSFGIMLMETFTRKKPTDELFVDGLNMKGWISESLPHAITQIVDSNLLQDEGHCIDDITTSISSIFRLALNCCADLPEERMNMTNVVASLNQNKVMYLSEN. 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05349 844 ProSitePatterns Protein kinases ATP-binding region signature. 567 589 IPR017441 GO:0005524
Seca12g05349 844 Gene3D Ribonuclease Inhibitor 265 502 IPR032675 -
Seca12g05349 844 Gene3D Phosphorylase Kinase; domain 1 523 636 - -
Seca12g05349 844 Pfam Leucine rich repeat 25 84 IPR001611 GO:0005515
Seca12g05349 844 Pfam Leucine rich repeat 199 258 IPR001611 GO:0005515
Seca12g05349 844 Pfam Leucine rich repeat 368 427 IPR001611 GO:0005515
Seca12g05349 844 ProSiteProfiles Protein kinase domain profile. 561 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05349 844 SUPERFAMILY Protein kinase-like (PK-like) 538 833 IPR011009 -
Seca12g05349 844 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 266 489 - -
Seca12g05349 844 PANTHER OS04G0122200 PROTEIN 479 831 - -
Seca12g05349 844 SMART serkin_6 561 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05349 844 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 637 844 - -
Seca12g05349 844 Pfam Protein kinase domain 562 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05349 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 680 692 IPR008271 GO:0004672|GO:0006468
Seca12g05349 844 SMART LRR_sd22_2 391 406 - -
Seca12g05349 844 SMART LRR_sd22_2 462 487 - -
Seca12g05349 844 SMART LRR_sd22_2 197 223 - -
Seca12g05349 844 SMART LRR_sd22_2 23 49 - -
Seca12g05349 844 SMART LRR_sd22_2 342 365 - -
Seca12g05349 844 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 160 - -
Seca12g05349 844 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 168 262 - -
Seca12g05349 844 FunFam Serine-threonine protein kinase plant-type 543 636 - -
Seca12g05349 844 SMART LRR_typ_2 120 144 IPR003591 -
Seca12g05349 844 SMART LRR_typ_2 23 47 IPR003591 -
Seca12g05349 844 SMART LRR_typ_2 197 221 IPR003591 -
Seca12g05349 844 SMART LRR_typ_2 245 268 IPR003591 -
Seca12g05349 844 SMART LRR_typ_2 462 485 IPR003591 -
Seca12g05349 844 SMART LRR_typ_2 342 367 IPR003591 -
Seca12g05349 844 SMART LRR_typ_2 71 95 IPR003591 -
Seca12g05349 844 SMART LRR_typ_2 391 414 IPR003591 -
Seca12g05349 844 SUPERFAMILY L domain-like 366 486 - -
Seca12g05349 844 PRINTS Leucine-rich repeat signature 224 237 - -
Seca12g05349 844 PRINTS Leucine-rich repeat signature 462 475 - -
Seca12g05349 844 Gene3D Transferase(Phosphotransferase) domain 1 637 842 - -
Seca12g05349 844 SUPERFAMILY RNI-like 5 380 - -
Seca12g05349 844 Gene3D Ribonuclease Inhibitor 1 159 IPR032675 -
Seca12g05349 844 Gene3D Ribonuclease Inhibitor 160 264 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05349 Seca-Chr12 143514494 143529815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05349 5 833 Receptor kinase-like Gene Family AT3G47570 34.862 7.72e-146 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca12g05349 Pkinase 6.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05349 - K13420 gmx:100784397 1008.44