Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05338 ATGGTGAAAATCTCGGTTGGTGGATACGATGATGGGGAAGGACCTAGCAACCCAACCCAGAAGCGACGCTGGGAAGAATTTGAAGACGAAGAAGAAGAAGAAGTAGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGATCAAGAACAACAATTACAGCAAAGCTATGAAATGGAAGACCTTCCAATTGGGACCCAAGAAGCAGAACAAGAACACAACAACAATGAAACTGAAGGAAGCATTGGATCCAACGCCAACCTAGGAAACAGTAATGACAGGGGCAGGTCCATTTCTGCAATCATAACCGACCCTGATGTCCTTGATTGCTTCATTTGCTTTGAACCCTTGAGTGTTCCTGTCTACCAGTGTGAGAATGGGCATATTGCTTGCTCTAATTGCTGTGCCAGGCTTCGGAACAAGTGTCCCATGTGCTCAATGCCCATTGGCTATAATCGATGCCGAGCTGTGGAGAAGGTGCTAGAATGTATTAAAATATCATGCCTGAATGCAAAATATGGCTGTAAAGAGATGTTTAGTTACAGTGTGAAAAGTGACCATGAGGAGGATTGCATCTACATACCATGTTTATGCCCAGATACAGGTTGCAGCTTTGTTGCCTCATCCAAGGAGTTATCTCTCCACTTCAGCCATAGACATGTAGGTTCTGGAATACAGTTTACATATGATAGATTTTTCACTGTCTTCTTAAACACTGACCAAAAAGCTGTTGTTCTTCAAGAGAAAAATGATGCTAATCTGTTTATTGTTCAAAACAACCGTGAGAGTCTGGGAAATATAGTCCATATCAGTTGCATTGGCCCCAAATTGATGGCAGGGTTTCATTATGATGTCTTGGGAAGGTCTCGGGGAAGCACTCTAATATTGCAATCTGTTACCAGGATCATTCAAAGCATTGGTCGGACTCCTTCAACAGGGTTCCTTTTGATTCCATCTGACTTTTTTGGTTCTGGACAACTCATACTGGATATTCGCATAAAGTTACAACATTAA 1014 0.428 MVKISVGGYDDGEGPSNPTQKRRWEEFEDEEEEEVEEEEEEEEEEEEDQEQQLQQSYEMEDLPIGTQEAEQEHNNNETEGSIGSNANLGNSNDRGRSISAIITDPDVLDCFICFEPLSVPVYQCENGHIACSNCCARLRNKCPMCSMPIGYNRCRAVEKVLECIKISCLNAKYGCKEMFSYSVKSDHEEDCIYIPCLCPDTGCSFVASSKELSLHFSHRHVGSGIQFTYDRFFTVFLNTDQKAVVLQEKNDANLFIVQNNRESLGNIVHISCIGPKLMAGFHYDVLGRSRGSTLILQSVTRIIQSIGRTPSTGFLLIPSDFFGSGQLILDIRIKLQH. 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05338 337 MobiDBLite consensus disorder prediction 1 90 - -
Seca12g05338 337 ProSiteProfiles Zinc finger RING-type profile. 110 146 IPR001841 -
Seca12g05338 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 216 IPR013083 -
Seca12g05338 337 SUPERFAMILY RING/U-box 109 152 - -
Seca12g05338 337 SUPERFAMILY TRAF domain-like 164 333 - -
Seca12g05338 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 45 334 IPR044286 -
Seca12g05338 337 MobiDBLite consensus disorder prediction 68 90 - -
Seca12g05338 337 CDD RING-HC_SIAHs 108 146 - -
Seca12g05338 337 Pfam Seven in absentia protein family 153 258 IPR018121 GO:0005737|GO:0006511|GO:0007275
Seca12g05338 337 MobiDBLite consensus disorder prediction 27 54 - -
Seca12g05338 337 ProSiteProfiles Zinc finger SIAH-type profile. 163 221 IPR013010 GO:0008270
Seca12g05338 337 Coils Coil 21 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05338 Seca-Chr12 143334902 143337840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05338 69 220 C3H Transcription Factor Family AT2G41980 32.468 1.12e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05338 K04506 - gmx:100778869 423.32