Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05333 ATGGATCATGTTAATGTACCACTTGAAGTTGTGGCTGTGGTGAATGAAGGTGATGAATTTCGACAGAGTGAAAATGTAAACATTACTATGGATGGCCAAGACGTTCACATGGAGGAGGCAGAAGACAATATAGAAATTGAGGCTGGCATGAGGTTTGACAATGCGGAAGAAGCTAAGAGGCTTTACCAGGAGTTTGCAATTAGAAAAGGATTTGCTATTGTGACTAGGAATTCCCGAAAAGGACTTGATGGTAAGGTGACATACTTCATTTTTGCTTGTTCAAGGCAGGGGACTTATGTTTCATCCACACCCACTGATGTGAAGGCAATACCATCTAGAAGAATGTATTGTACAGCTCACATCACTGTGACTCTGCGTAAAGATGGGTTTTGGTACATCCAGAAATGTGTACATGAACATAGTCATGACCTGAGTCCTGGAAAGTCGAGATTATTTGCAAAGAATCGGAAGATGAGCTTGCATGTGAAACGACTTGTTGAATTAAACGATGAAGCAGGTGTTAGGATAAACAAGAGCTTCCGATCTCTAGTTTATGAAGCAGGAGGATATGAAAATGTCCCATTTGTTGAAAGAGACATACGGAATTACATGGGGCAGAAAAGACGGACCCTCAGCAAGGATGGTGATGCCAAGGCCCTTCTAAGTTACTTTGCAAGAATGCAACAACAAATCTCAAATTTTTATTATGAAATAGACTTAGATGATGAAAGTCGCTTGAGACATGTATTTTGGGCAGATGCAAGGAGCAGGGCAACATATGAGTATTTTGGAGATGTTGTGTCATTTGACACCACATACCTCACCAATAAATATGACATGCCTTTTGCACCATTCGTTGGGGTGAATCATCATGGCCAATCTATTTTACTTGGGTGTGGATTGGTATCATCAGAAGAAACATCATCCTTTGTTTGGTTGTTTGAGACATGGCTTCGATGCATGGGTGGAAAGCCTCCGGTGGGTATTGTGACAGACCAGTGCAAGGCAATGCAAAAGGCCATTGAGATTGTATTTCCCACTACTCGACATCGGTGGTGTTTGCAGCACATCATGAAGAAAATTCCAGAAAAGTTGAAGAGTTATCTTCAATACAAGTCAATGAAGAATGAGTTGAAGTGTGTAGTGTACGACTCACTAAGTGAGGCTGAGTTTGAACCTGCATGGACGACTTTCATCAACAAATATGGATTAGAGGATAATGAGTGGTTGTCGGGGCTGTACCATGATAGGTCCAAGTGGGTTCCTTGTTTGTTGAAGAAGCATTTTTGGGCAGGAATGTCAACCACACAGAGAAGTGAAAGTGTCAATGCATTTTTTGATGGATATATCAATGCATCGACAAACCTACAGGAGTTTGTTAAACAGTATGAGAATGCTTTGCATCAAAAGGCCGAAAAGGAATATGAGGCAGATTTCCAGTCCTTTAACACCATACTCCCTTGTGGGTCAAATTCGCCAATGGAGAGACAATTCCAGGATGAGTACACACATTCTAAGTTTAAAGAGGTTCAGATTGAATTTAGAGCAAAGATGAATTGCATTGCTGCTTGTGAAAGTGTGGATGGATCCCTATGTTTGTATAAGGTGATAGAAGACTTGTATGTTGGTGGAAATCCTAGAGAGGCGAAGTATGTTGTTAGGTTCAGTCGTGACCCGGTTAGTGTGGAATGCAACTGTCTCCTATTTGAGTTTAAAGGGATCCTTTGTAGGCATGCCCTGACTGTTCTATCTCAAGAAAGAGTAAAGGAAGTGCCGAATGTGTACCTATTACCCAGGTGGAGCAAAAATGTCCATAGGAAGCACACTTACATTAAGTGTAGTTATGATGCCAAACAACATGGCCCAAAAATGTGTCGTTTCGATGAGTTGTGTAAAGACTTCTATATGGTGGCTGAAATAGCAGCTGAAACTCCAGAGGGCACAAGTCTATTAGCACAAACTATTCTTGGTGTGAAAGATATAGTGAAGGCAATTGGTGCTTGCACACAAAATTTGTACTCAAATGAGGAAGTCCACCGTACTGAACAAGTTGAAGAAAGAATTTGTTAG 2070 0.4111 MDHVNVPLEVVAVVNEGDEFRQSENVNITMDGQDVHMEEAEDNIEIEAGMRFDNAEEAKRLYQEFAIRKGFAIVTRNSRKGLDGKVTYFIFACSRQGTYVSSTPTDVKAIPSRRMYCTAHITVTLRKDGFWYIQKCVHEHSHDLSPGKSRLFAKNRKMSLHVKRLVELNDEAGVRINKSFRSLVYEAGGYENVPFVERDIRNYMGQKRRTLSKDGDAKALLSYFARMQQQISNFYYEIDLDDESRLRHVFWADARSRATYEYFGDVVSFDTTYLTNKYDMPFAPFVGVNHHGQSILLGCGLVSSEETSSFVWLFETWLRCMGGKPPVGIVTDQCKAMQKAIEIVFPTTRHRWCLQHIMKKIPEKLKSYLQYKSMKNELKCVVYDSLSEAEFEPAWTTFINKYGLEDNEWLSGLYHDRSKWVPCLLKKHFWAGMSTTQRSESVNAFFDGYINASTNLQEFVKQYENALHQKAEKEYEADFQSFNTILPCGSNSPMERQFQDEYTHSKFKEVQIEFRAKMNCIAACESVDGSLCLYKVIEDLYVGGNPREAKYVVRFSRDPVSVECNCLLFEFKGILCRHALTVLSQERVKEVPNVYLLPRWSKNVHRKHTYIKCSYDAKQHGPKMCRFDELCKDFYMVAEIAAETPEGTSLLAQTILGVKDIVKAIGACTQNLYSNEEVHRTEQVEERIC. 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05333 689 Pfam MULE transposase domain 266 360 IPR018289 -
Seca12g05333 689 SMART 26again6 562 589 IPR006564 GO:0008270
Seca12g05333 689 ProSiteProfiles Zinc finger SWIM-type profile. 551 587 IPR007527 GO:0008270
Seca12g05333 689 Pfam SWIM zinc finger 563 584 IPR007527 GO:0008270
Seca12g05333 689 Pfam FAR1 DNA-binding domain 61 145 IPR004330 -
Seca12g05333 689 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 32 651 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05333 Seca-Chr12 143293637 143295706 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g05333 MULE 5e-33 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05333 - - psat:127087122 774.237