Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05332 ATGGTCTCATCCCCTGCAGCATCCAATAACCCCAACATGTCCAATGAGAATTTTGTGATGAGGGAATTGATAGGGAAATTAGGAGCTGTTGGAAACTCTGATGAGATCTCACCACATTCTCAGCCTTTGGTTGTTGCATCTTCTTACATGAATGGTGGGAATAACAGCACCAACACTTCATGTTACAGCACTCCTTTGAGTTCTCCTCCAAAGCTCAACATTGCCCCAATGATGAACCATTTGGTGAAAGAGAATTTGCCTAAACCAATGGCTCTCAATTCCAGTGTGGCAGAATTCTCAGCTGATCCTGGTTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGGAGCAGGAGTTTTAATGATCGGAGTAGCCAATTGGTTGTGAACAATGGTGAATTAGCTAAGAGATCTGCACCAGTAATGGAAAATGGGAAGCTACTAACAAGAGTCTCAAGTAGTCCATCACTCAAGACATTTGAATCTCAAATGGAGAACAAGAATAGTCCATTACAGGATCAGGATAGAATGGAAGTGGCCAATTCTCAAGAGGAATCTACAATCTCTGAGCAAACCCCAAATGGGGAAAAGATTACATTCATGTTAGAGCAAGAAGAGGCCAAGCTACTGACAGCTATAGTCTTGCAGAACGTAAGGAGGGAGAAAATCAGTGAGAGGATGAAGCTTCTCCAAGATCTTGTACCAGGTTGCAATAAGGTCACTGGTAAGGCACTTATGCTTGATGAAATTATAAATTATGTTCAGTCATTGTAG 774 0.4212 MVSSPAASNNPNMSNENFVMRELIGKLGAVGNSDEISPHSQPLVVASSYMNGGNNSTNTSCYSTPLSSPPKLNIAPMMNHLVKENLPKPMALNSSVAEFSADPGFAERAAKFSCFGSRSFNDRSSQLVVNNGELAKRSAPVMENGKLLTRVSSSPSLKTFESQMENKNSPLQDQDRMEVANSQEESTISEQTPNGEKITFMLEQEEAKLLTAIVLQNVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSL. 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05332 257 Gene3D - 216 257 IPR036638 GO:0046983
Seca12g05332 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 257 IPR011598 GO:0046983
Seca12g05332 257 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 218 257 IPR024097 GO:0006355
Seca12g05332 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 257 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05332 Seca-Chr12 143290903 143291881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05332 1 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 41.379 3.09e-48 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05332 - - gmx:100787699 258.84