Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05314 ATGAAAATATCCTCCGATTCTTTCCCTCTACTCTGTGCGTGTGTGTGTGTTTTTGTGAATGTTTTGCAGTACGAGAAGGTTGAGAAGATAGGTGAAGGAACCTACGGCGTCGTTTACAAGGCTCGTGACCGTGTAACTAACGAGACCATCGCGTTGAAGAAGATTCGCCTCGAGCAGGAAGATGAGGGGGTTCCCAGCACCGCCATTCGAGAGATTTCTCTCTTAAAAGAAATGCAGCACAGGAACATTGTTAGGTTGCAGGATGTAGTGCACAGTGAGAAGCGATTGTATCTGGTTTTTGAGTACCTTGACTTAGATCTAAAGAAGCATATGGATTCATCTCCAGAATTTTCAAAAGATCCTCGACAAGTAAAAATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAGTTCTTCATCGAGACTTGAAACCACAGAATTTGTTGATAGATCGCAGCACTAATGCACTAAAGCTTGCAGATTTTGGATTGGCTAGGGCATTTGGAATTCCTGTTAGGACATTTACACACGAGGTGGTGACACTATGGTACAGAGCTCCAGAAATATTGCTCGGATCCCGTCATTATTCTACCCCAGTTGATGTATGGTCAGTCGGATGCATATTTGCAGAAATGGTAAACCAACGACCTCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAAATATTCAGAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACGTCGTTGCCTGATTTTAAATCAGCCTTTCCCAAGTGGCCACCTAAGGACCTAGCAACTGTGGTCCCAAATCTTGAGCCCGCTGGTCTTGATCTTCTTTCTAGTATGATGCGATTGGATCCCACCAGAAGAATTAACGCCAGGAGTGCTCTTGAGCATGAATACTTCAAAGACATTAAATTTGTACCCTGA 945 0.4339 MKISSDSFPLLCACVCVFVNVLQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFSKDPRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRSTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRIMGTPNEDTWPGVTSLPDFKSAFPKWPPKDLATVVPNLEPAGLDLLSSMMRLDPTRRINARSALEHEYFKDIKFVP. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05314 314 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Seca12g05314 314 FunFam Cell division control protein 2 homolog 106 312 - -
Seca12g05314 314 PANTHER CELL DIVISION PROTEIN KINASE 23 307 - -
Seca12g05314 314 SMART serkin_6 24 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05314 314 Pfam Protein kinase domain 24 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05314 314 FunFam Cell division control protein 2 21 104 - -
Seca12g05314 314 Gene3D Transferase(Phosphotransferase) domain 1 106 312 - -
Seca12g05314 314 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Seca12g05314 314 ProSiteProfiles Protein kinase domain profile. 24 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05314 314 CDD STKc_CDK1_CdkB_like 24 307 - -
Seca12g05314 314 SUPERFAMILY Protein kinase-like (PK-like) 21 310 IPR011009 -
Seca12g05314 314 Gene3D Phosphorylase Kinase; domain 1 22 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05314 Seca-Chr12 142963979 142969870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05314 23 314 Core Cell Cycle Gene Families AT3G48750 86.301 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Seca12g05314 Pkinase 5.8e-79 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05314 K02206 - gmx:100127418 568.926