Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05309 CTAAGCACATTCCTTCCTATTTCCACCAGCCATCGGAGAAGCACAGCGAAACCAGTAACATCACGAAGCCAAGCCAAGCCAAGCAAAGCAAAGGAAGCAATGGAGTGGAAGTGGAAGACGAAGAAGCAGCCACGCTTGCAGCGAGTGAATGCTAAGAAGAACATCGATTATCAACCCCCTTCCCCCAGTATCCCTTCACCTACTCCTTCCTTCCGTTCCGAGCAGCAAACCAGTCTCCGCGTCATGGGTATCGACGGCGAATTCGACCGCATCTTTCAGAGCTTGGGCCTTTCTGGACCCGAAGACTTTGCTATCCCAACTGCAGATTGGGAAGCCCGAAAGGCTCGCTTTGCTTCCTCTGATGTTCCACTCAAATTGGAAACCACTACTTCTCACGCTGACTTCAAAAATGGTACCTTTGAAGGGGAACACTCGAACCTGAAGCTGAAGGTGAAGCTTAAGCCTGAGAATGGAGATGGGGCTGGTGGAGGAGGAGGGATCAAGGGTGTTAGGCCTCCCCTTTTAGTTCCAGTTCCACCCTCGACGATTTTGAGTCCAATTGTTGATGGGGTTAGTTCTACTTGGAATTCCACGAGGTCTTTTGCTGTACCCCAACATGATACTGATGCTATTGGTGTCGGTGTTGGTGTTGTTGATTCTCCCTCATCTTCGGGTGAGCATGATGTTAGGGGTGTTGTGGGTCGGCTGAGAAATATGGAAAGGAGTGTGCTTTTTACTGATTCTGGTTCGTTCACTACATCCCATGATGATGATAGTGATATTGGTGGTGAGAGGGCTTGTTCTTGTTCTGGTTCTGGCTTGGCTGATGAGCTTGTTTGTTATGTTTCTTCAAATGATTGGTTTAGACGAACTTTCTCCTCGTGGCAAAAGGGTGACATTTTGGGAAAGGGATCCTTTGGAACGGTGTATGAAGGCTTCACGGAGTGCGTGTTTTCCCTTTTTTGTTTCCTCTTTTCTCTTTTAATTGTCTTTGATTGTGATGGATTCTTTTTTGCGGTAAAGGAGGTGTCTTTGCTGGATGAAGGTATCCAGGCAAAACAGAGCATTCTCCAACTTCAGCAGGAAATATCTCTGTTGAGCCGGTTTCAACATGACAACATAGTTCGATATTTTGGCTCAGACAAGGACGAAAGTACACTATATATCTTCCTTGAGCTTGTGTCGAAAGGGTCATTGGCCAGTCTTTATCAAAAGTATCGCTTAAATGATTCTCAAGTTTCTGCATACACAAGGCAGATTTTAAATGGCTTGAAGTATCTTCATGATCGAAATGTGGTCCACAGGGATATCAAGTGTGCTAATATACTGGTTGATGTAAGTGGGGCTGTCAAGCTTGCAGATTTTGGGTTGGCAAAGGCAACAAAAATGAATGATGTTAAATCAAGCAAAGGCTCCCCATACTGGATGGCTCCTGAGGTTGTTAACTTAAAGAACCAAGGTTATGGGCTAGCAGCTGATATATGGAGCTTAGGGTGCACTGTTTTAGAGATGTTGACAAGGCAGCCTCCTTACTCTGAATTGGAAGGAATGCAAGCATTATTTCGGATTGGCAGGGGTGAACCTCCACCTATTCCGGAATCTTTATCTAGAGATGCCCAAGATTTCATTCTTAAATGCTTACAAGTAAACCCAAATAAACGCCCAACTGCAGCCCAGCTATTGGATCATCCATTTCTAAGGAGACCATTTATACCTCCCTTAAGTCCTGCTTCTCCACATAGTATCTTACGGTTTTAA 1758 0.4522 LSTFLPISTSHRRSTAKPVTSRSQAKPSKAKEAMEWKWKTKKQPRLQRVNAKKNIDYQPPSPSIPSPTPSFRSEQQTSLRVMGIDGEFDRIFQSLGLSGPEDFAIPTADWEARKARFASSDVPLKLETTTSHADFKNGTFEGEHSNLKLKVKLKPENGDGAGGGGGIKGVRPPLLVPVPPSTILSPIVDGVSSTWNSTRSFAVPQHDTDAIGVGVGVVDSPSSSGEHDVRGVVGRLRNMERSVLFTDSGSFTTSHDDDSDIGGERACSCSGSGLADELVCYVSSNDWFRRTFSSWQKGDILGKGSFGTVYEGFTECVFSLFCFLFSLLIVFDCDGFFFAVKEVSLLDEGIQAKQSILQLQQEISLLSRFQHDNIVRYFGSDKDESTLYIFLELVSKGSLASLYQKYRLNDSQVSAYTRQILNGLKYLHDRNVVHRDIKCANILVDVSGAVKLADFGLAKATKMNDVKSSKGSPYWMAPEVVNLKNQGYGLAADIWSLGCTVLEMLTRQPPYSELEGMQALFRIGRGEPPPIPESLSRDAQDFILKCLQVNPNKRPTAAQLLDHPFLRRPFIPPLSPASPHSILRF. 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05309 585 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 71 570 - -
Seca12g05309 585 MobiDBLite consensus disorder prediction 1 73 - -
Seca12g05309 585 SUPERFAMILY Protein kinase-like (PK-like) 282 580 IPR011009 -
Seca12g05309 585 MobiDBLite consensus disorder prediction 28 42 - -
Seca12g05309 585 SMART serkin_6 295 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05309 585 ProSiteProfiles Protein kinase domain profile. 295 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05309 585 MobiDBLite consensus disorder prediction 1 27 - -
Seca12g05309 585 Pfam Protein kinase domain 337 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05309 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Seca12g05309 585 Gene3D Transferase(Phosphotransferase) domain 1 293 576 - -
Seca12g05309 585 FunFam Mitogen-activated protein kinase 1, putative, expressed 293 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05309 Seca-Chr12 142906118 142914263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05309 167 570 MAP Kinase Kinase Kinase AT4G08500 51.338 1.78e-123 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca12g05309 Pkinase 9.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05309 K13414 - aip:107631583 649.432