Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05308 ATGAGCAAAGTGGACAAATTAAGAAAGAGATTTTTCAAAATGGGTAGAGGAGAAGAACCCACAAAGATGGAGATTGATCTCTCTTTGAAGATAGATACTGATGATGATGATGAGCAAAGAGAAGAAGAAGAAGCAGCAAAGGTAGATGATGACAAGGAAGAAATGCCACAGAATAAGGAAGAAGCCCCTGAAGCCACATCTGGTGGTGAAATAGAAGAAGATGATGCATCAGTTGTTGAAATATCTTTGCAAGATAACACAAAATTAAAAGAGTTAAGTGCCTTGCAAATGGAGATGGAGAGCATGAAAGAGGAAAACAAAGTTCTGAGGAAAGTGGTGGAACAAACAATGAAAGACTACTATGATCTACAAATGAAATTTTCAATCATCCAGGAAAATAATAAAAGAAAGGATCATCAATTTTCTCTCTCACTCCAAGATAATGCAACCACCAGCGAGGAAGGAGGGTCGAAAATTCTTGAGATGTTTAATAAAAAAATTCAAAGAGCTGATCCATCTCCACCAAACAGTACTGATGATAGTATAAGCGAGAGTGAATTGGGTTTATCACTGAGGTTGCAAACAAGCACAAGTACTCAAAAAGAGAAAGAGGGAAATGAAAAGGAAGATCAGAAAAAAGAGCATGAATTGGAAATTGCATCTGCAGTAGTGCAGAATAAATTACAGCGTACACATGACTTGTCTCCAGGTATTACAACCCATGCTGCTTCCCCTCCTAACAGAAAGGCTAGGGTTTCGGTTAGAGCAAGATGTGAAGCCGCTACAATGAATGATGGGTGCCAATGGAGAAAATATGGGCAGAAAATTGCAAAAGGAAATCCATGTCCGCGTGCCTACTATCGTTGCACGGTAGCTCCAGGATGCCCCGTTAGGAAACAGGTGCAAAGATGTATAGATGACATGTCCATACTAATTACAACCTATGAAGGAACACACAACCATCCACTCCCAGTTGGTGCAACTGCAATGGCTTCTACAGCTTCTGCAGCAGCTTCCTTTATGTTGCTAGACTCAAGCAATCCTATTTCAGATGCTTTCACCCATGCAGCCCTTCCTTACAACACCTTCCACCCATTAAACCCACCTTCCAACATTAGAAGCATAAACCCCAATGATCCATCCCAAGGGATTGTTCTTGATCTCACCAATAACAATGAACCTCCACGTTTTTCCAGTACTGGTAGCTCCTCCAAGACGACAGCAACAACTAATCCTCATTTTTCTTGGATGCCAAACAAGTACCAAAGTAGTAGTACTACCATTGCAATGAACAATTTTCACAACCCTAGACTACCGTTGGATCATGATCATAGGATTTGGAAAGGAGAAGAAAGTAATAAGCCATTGGAAGACAATGTGTCTGCAATTGCCTCAGATCCTAAGTTTAGGGTTGCTGTTGCAGCGGCTATAACATCACTCATGAATAAAGAGAGCCATATAGGGACTTCTTTTGGTCCTAGGAGTGGACAAAATGGTAGCTCTAGTAGCAACAATTGGGTCCTTGAATCTCTCTCAACAAATGGTAAGCCCACTTAA 1557 0.4085 MSKVDKLRKRFFKMGRGEEPTKMEIDLSLKIDTDDDDEQREEEEAAKVDDDKEEMPQNKEEAPEATSGGEIEEDDASVVEISLQDNTKLKELSALQMEMESMKEENKVLRKVVEQTMKDYYDLQMKFSIIQENNKRKDHQFSLSLQDNATTSEEGGSKILEMFNKKIQRADPSPPNSTDDSISESELGLSLRLQTSTSTQKEKEGNEKEDQKKEHELEIASAVVQNKLQRTHDLSPGITTHAASPPNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNPISDAFTHAALPYNTFHPLNPPSNIRSINPNDPSQGIVLDLTNNNEPPRFSSTGSSSKTTATTNPHFSWMPNKYQSSSTTIAMNNFHNPRLPLDHDHRIWKGEESNKPLEDNVSAIASDPKFRVAVAAAITSLMNKESHIGTSFGPRSGQNGSSSSNNWVLESLSTNGKPT. 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05308 518 Coils Coil 92 119 - -
Seca12g05308 518 SMART WRKY_cls 263 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g05308 518 MobiDBLite consensus disorder prediction 168 215 - -
Seca12g05308 518 MobiDBLite consensus disorder prediction 1 29 - -
Seca12g05308 518 MobiDBLite consensus disorder prediction 392 418 - -
Seca12g05308 518 MobiDBLite consensus disorder prediction 201 215 - -
Seca12g05308 518 MobiDBLite consensus disorder prediction 1 76 - -
Seca12g05308 518 MobiDBLite consensus disorder prediction 30 49 - -
Seca12g05308 518 ProSiteProfiles WRKY domain profile. 258 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g05308 518 MobiDBLite consensus disorder prediction 488 518 - -
Seca12g05308 518 MobiDBLite consensus disorder prediction 170 200 - -
Seca12g05308 518 SUPERFAMILY WRKY DNA-binding domain 256 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g05308 518 Pfam WRKY DNA -binding domain 264 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g05308 518 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 62 496 IPR044810 GO:0003700
Seca12g05308 518 Gene3D WRKY domain 248 325 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g05308 518 FunFam probable WRKY transcription factor 31 248 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05308 Seca-Chr12 142856373 142860032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05308 38 383 WRKY Transcription Factor Family AT1G68150 46.218 2.98e-85 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g05308 WRKY 1.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05308 - - gmx:100820209 633.639