Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05302 ATGGTTTGGAGATTTTTAATTACCTTTGCTGATATTCTGGAATTATGGTCTTTTACTCTTGATGAGTTTGTGCAAGCATTTCACGACTATGTAAGAACTTTTGGCCAGGTCTTGGAATGTTTTGACAATGAAAAGAACATGAGCGGGATATTTTCATTACTGCTTGCCTATATGGAAGCTTGTCCTTCTGGCAATTTTGGTCTCTGA 207 0.372 MVWRFLITFADILELWSFTLDEFVQAFHDYVRTFGQVLECFDNEKNMSGIFSLLLAYMEACPSGNFGL. 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05302 68 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 30 IPR044977 GO:0006357
Seca12g05302 68 Pfam DDT domain 1 29 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05302 Seca-Chr12 142731775 142732683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05302 1 37 Homeobox Transcription Factor Family AT1G28420 68.421 4.37e-15 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Seca12g05302 DDT 2.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05302 - - psom:113316999 66.2402