Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05300 ATGTCTCACCGTAAGTTCGAGCACCCGAGGCACGGTTCCCTTGGCTTTCTTCCAAGGAAACGAGCTTCTCGTCATCGCGGAAAAGTGAAGGCTTTCCCAAAAGATGATCCTAGTAAACCATGCAGATTGACTGCCTTTGTGGGCTACAAGGCTGGGATGACCCACATTGTCAGAGAGGTCGAGAAACCTGGATCAAAGCTTCATAAGAAAGAGACTTGTGAGGCTGTTACTATCATTGAAACTCCTCCTCTAGTTGTTGTTGGAGTAGTAGGTTATGTGAAGACACCACGTGGTCTTCGCACACTGAATACTGTTTGGGCACAGCATCTAAGTGAGGAAGTTAAGAGACGATTTTACAAGAACTGGTGCAAATCTAAAAAGAAGGCTTTTACCAAATACACAAAAAAATATGAAACTGAGGAAGGAAAGAAAGATATTGAATCTCAGCTTGAGAAACTGAAGAAATATGCAACTGTCATTCGTGTTCTGGCTCATACACAGATAAGGAAGTTGAAGGGTCTGAAACAGAAGAAGGCACATTTGATGGAGATCCAAGTTAATGGTGGGACAGTAGGCCAGAAGGTGGACTATGCATACAGCTTCTTTGAGAAGCAAGTCCCAGTGGACGCTGTTTTCCAAAAAGATGAGATGATAGACATCATTGGTGTGACCAAGGGTAAAGGTTATGAAGGTGTTGTGACTCGATGGGGTGTTACTCGCCTTCCACGTAAGACTCACAGAGGTCTAAGGAAGGTAGCCTGTATTGGTGCTTGGCACCCTGCTCGTGTTTCCTTTACTGTTGCTAGGGCTGGTCAGAATGGATACCATCATCGTACTGAGTTGAACAAAAAAATCTACAAGATGGGCAAGTCAGGCCAAGAGACACATTCAGCCATCACTGAATTTGACAGGACGGAGAAGGATATTACTCCTATGGGTGGATTCCCTCATTATGGTGTGGTAAAGGATGATTATATTATGGTCAAGGGATGCTGTGTTGGACCGAAAAAGCGGGTTATCACTCTTCGTCAGTCTCTACTCAAGCAGACATCTCGATTGGCTCTTGAAGAGATCAAACTGAAGTTCATTGACACATCATCCAAGTTTGGACATGGCCGCTTCCAGACCACTCAGGAGAAGCAGAAGTTTTTTGGTCGGTTGAAGGCTTAA 1170 0.4453 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRTLNTVWAQHLSEEVKRRFYKNWCKSKKKAFTKYTKKYETEEGKKDIESQLEKLKKYATVIRVLAHTQIRKLKGLKQKKAHLMEIQVNGGTVGQKVDYAYSFFEKQVPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKMGKSGQETHSAITEFDRTEKDITPMGGFPHYGVVKDDYIMVKGCCVGPKKRVITLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05300 389 FunFam 60S ribosomal protein L3 44 144 - -
Seca12g05300 389 FunFam Ribosomal protein L3 265 389 - -
Seca12g05300 389 Gene3D - 83 207 - -
Seca12g05300 389 FunFam 60S ribosomal protein L3 83 207 - -
Seca12g05300 389 Gene3D Translation factors 44 385 - -
Seca12g05300 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Seca12g05300 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Seca12g05300 389 MobiDBLite consensus disorder prediction 1 36 - -
Seca12g05300 389 FunFam 60S ribosomal protein L3 1 77 - -
Seca12g05300 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Seca12g05300 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 384 IPR045077 GO:0003735|GO:0005840|GO:0006412
Seca12g05300 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Seca12g05300 389 FunFam 60S ribosomal protein L3 226 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05300 Seca-Chr12 142717822 142721512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05300 1 386 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 87.306 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05300 K02925 - gmx:100792174 738.028