Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05287 ATGAAGGGGGAATATAACTTAATGGAAAGACTCAAACCAATCTTACTAATGGTGTTTGTGCAGATTGCATTTTCTGCGGTGAATATCTTCTACAAGCTCGCCATTAACGATGGAATGAGTATGAGGATTGCTACTGCTTACCGTCTCACTTTTGCTTCAGCTTTCACAATCCCCACTGCTCTTATCTTTGATAGGAAGAAGAGACCAAAGATTACCTGGAGGATGCTTTTTATGGGATTTCTTTGTGGATTGTTTGGGGGAAGTTTATTTTTAAACCTTTACGCCGAGGGTCTGGCTTTGATGTCAGCAACGTTTATGATGGCCATGCTCAACCTTATTCCAGGCATTACCTTCATCATGGCCGCATCCTCCAGATTGGAAAAATTAAATTTGAGAGCAGCAGAAGGAAAGGCGAAGGTGATAGGAACAGCACTTGGAATTAGTGGGGCAATGCTGTTGACTTTTTTCAAAGGGGTTCAAATTAATATTTGGTCTTCCAATATCAATCTTATGCATCCACATCCAAACCAAAATGGGCATATTGGACCGCAACATCCAGGCTTTAATAATAAACTCTTGGGTGTTCCGTGTGCCATAGGAAGCTGCTGCTCTTTTTCTCTGTGGCTTATAATTCAGGCTAAGATGAATGAAGAATTCCCAAACTATCCCACAAGCTCAGCTTTGATGTCCACAACGGGAGCCATACAAGCCATTGTTCTTGCTCTCTGTGTTGATAGGGATTGGAATCAATGGAAGCTCGGTTACAATATCAGGCTTTTAACCGCAGCCTATTCGGGAATTGTGACCTCTGGAGTAGTGGTTATTGTCATGGCATGGTGCATAAAGATGAGAGGCCCTCTATTTGCGTCTGTTTTCAATCCACTACAGCTTTTACTTGTGGCTATTGCTGCTTATTTGTTATTGGATGAGAAGTTATATTTAGGAAGTGTGATTGGAGCAGTGATGATCGTGTGTGGCCTATATGCGGTACTTTGGGGTAAAGGCAAAGAAATTGAAAAGACGACTCAGTTAGTGCCATTTGAAATTACCGGAAAGTCTGAAACTGTTGAGGTTGCTATTATGTCTCCGTCTGATAAATGTGTCCAAAGCTATAGAGACTCAAAGATGGTTAATTTATGCAGTGTTGAAACCATAAATGGTGTGAAGCCTGTACTGTTAATGATAGTGGTCCAGTCTCTATATGCAGTGGTTAATATCTTGTTAAAGGTGGTAGCAGATGATGGAATGAGCTTAGGTGTTCTTATTGCCTACCGTTTTGTCTTTTCCTCTGCCTTCATTGTTCCATTGGCTCTCCTCTTTGAAAGGAAAAGCATGCAATACCTTACTGGGAAAGTTCTATTCCAAGCTTTTATTTGTGGATTATTTGGGGGATCCTTACTACAAAACGTCTATGTCAAAGCTTTGGCCTTGATATCTGCAACATATACAACAACCATGTTAAACCTCATCCCAGCTGTTACCTACATCATGGCTGTTTCTCTTAGACTGGAGAAGCCAAATCTTGGAACACATGCTGGGAAGGCCAAGTTGCTGGGCACTATAACAGCAATTGGTGGTGCCATGATCCTCACTTTATATGAAGGCAGAAGGATATTCAACTGGTCAATACACGTTGACTTATTTCAACATGCAGCACCATCACCAGAGAGTGCCACCTCTGGTTCTCGCTTGTGGGGCTTCCTGCTAGCTCTGGTCACCCCTGTGAGTTACTCATTGTGGTTGATAATCCAGACAAAGATGAGTGAGAAGTTCCCGTGGCACTATTCAATTGCAGCTTTAACCTCTATAATGAGCGCAATCCTATCCATTATATTTGCTCTTTGTACGGAAAGAGATTGGAGCCAATGGAAACTTGCCTGGAACTTGAGGCTTTTAGCAGCAGCTTCCTCGGGTATCTTGGCCTCTGGGGTGTGTTATCCCCTGTTAGCATGGTGTGTGCACTTGAAGGGACCTCTGTTTGTGTCTGCTTTTAGTCCTCTAATGCTTGTGCTAGTGGCCCTAGGTGGGTCCTTAGTACTAGATGAGTATATTACCATTGGAAGTCTATTAGGAGCAGTGTTGATTGTGTGCGGATTGTACATGCTGTTATGGGGAAAAAGCAAAGAAACAAGGAAGGGAAAGAGTGAGATAGTGTCCGCAAATGTCTCTGTTGAATGTGATTCAATCCAAATTTGCAACCAAAGGAGCATGACAAGAAGATCACAGCAAGTGTTGCCCCCTACTCAAGTGTCAACAATTCTTTAG 2265 0.4252 MKGEYNLMERLKPILLMVFVQIAFSAVNIFYKLAINDGMSMRIATAYRLTFASAFTIPTALIFDRKKRPKITWRMLFMGFLCGLFGGSLFLNLYAEGLALMSATFMMAMLNLIPGITFIMAASSRLEKLNLRAAEGKAKVIGTALGISGAMLLTFFKGVQINIWSSNINLMHPHPNQNGHIGPQHPGFNNKLLGVPCAIGSCCSFSLWLIIQAKMNEEFPNYPTSSALMSTTGAIQAIVLALCVDRDWNQWKLGYNIRLLTAAYSGIVTSGVVVIVMAWCIKMRGPLFASVFNPLQLLLVAIAAYLLLDEKLYLGSVIGAVMIVCGLYAVLWGKGKEIEKTTQLVPFEITGKSETVEVAIMSPSDKCVQSYRDSKMVNLCSVETINGVKPVLLMIVVQSLYAVVNILLKVVADDGMSLGVLIAYRFVFSSAFIVPLALLFERKSMQYLTGKVLFQAFICGLFGGSLLQNVYVKALALISATYTTTMLNLIPAVTYIMAVSLRLEKPNLGTHAGKAKLLGTITAIGGAMILTLYEGRRIFNWSIHVDLFQHAAPSPESATSGSRLWGFLLALVTPVSYSLWLIIQTKMSEKFPWHYSIAALTSIMSAILSIIFALCTERDWSQWKLAWNLRLLAAASSGILASGVCYPLLAWCVHLKGPLFVSAFSPLMLVLVALGGSLVLDEYITIGSLLGAVLIVCGLYMLLWGKSKETRKGKSEIVSANVSVECDSIQICNQRSMTRRSQQVLPPTQVSTIL. 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05287 754 SUPERFAMILY Multidrug resistance efflux transporter EmrE 251 336 - -
Seca12g05287 754 SUPERFAMILY Multidrug resistance efflux transporter EmrE 424 535 - -
Seca12g05287 754 SUPERFAMILY Multidrug resistance efflux transporter EmrE 607 708 - -
Seca12g05287 754 PANTHER WAT1-RELATED PROTEIN 12 338 IPR030184 GO:0016020|GO:0022857
Seca12g05287 754 Pfam EamA-like transporter family 564 703 IPR000620 GO:0016020
Seca12g05287 754 Pfam EamA-like transporter family 12 154 IPR000620 GO:0016020
Seca12g05287 754 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020
Seca12g05287 754 Pfam EamA-like transporter family 390 530 IPR000620 GO:0016020
Seca12g05287 754 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05287 Seca-Chr12 142438070 142451203 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05287 388 739 Nodulin-like Gene Family AT1G25270 36.932 1.86e-79 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05287 - - gsj:114424758 956.436