Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05281 ATGAATGATGTATGGAAACTAGTGGATAGATTAAAGCCAACTTTGTTGATGGTGTTGGTGCAGATTGTATATGCTTCTGTGAATGTGCTTTACAAGCTCGCCATAAATGATGGAATGAGCATTAGGGTAGTCACTGCCTACCGCCTTATTTTCGCACTACCTTTCACTTTTCTTCTCGCTCTTGTTTTTGACAGAAAGAACAGGCCAAAGCTGACATGGAGGGTGCTTTTCATGTCATTCTTTTGTGGCCTATTTGGAGCAAGTATATTGCATAACCTTTTCCTTGAAGCCTTGGATCTGGTGTCAGCAACATTTGCTACCGCTGTTTATAATCTCACTCCTGCTGTGACTTTTATCCTGGCCATCTTCTGCGGCTTGGAAAAGTTAAATATGCAAACCGCAGCAGGGAAGGCCAAGGTATTAGGAACAATAATAGGAATTGGTGGGTCAATGCTGCTGACATTTTTTAAAGGGGTAGAAATTAACCTTTGGACCTTCCGCATTAATCTTCTGCATCAAAATGGCCAAATAGCAACTATGCATACTGGCTCTGGTGGTAAAAAATTGTTGGGCTTTTTGTGTGGTTTTGGAGGCTGCTTCAGTTTTGCATTATGGCTCATCATTCAGGCTAAGATGAGTAAAGAATATACAAGCCAATACTCAAGCACAGCATTGATGACCTTAATGGGGGCAATACAAGCCACTGCCTTTGCGCTCTGTGTTGAGAAAGATTGGAGTCAATGGAAGTTGGGTTGGAATATTAGGCTTCTAACTGCAGCTTATTCAGGAATTGTGGCCTCCGGAGCTATGGTTATTATCATTGCATGGTGTGTACGGATGAGAGGCCCAATGTTTGCATCTGTTTTCAACCCTCTCATGCTTGTGCTTGTGGCTATTGCTGGTTCCTTGATGTTAGTTGAGAACTTATATGTGGGAAGTGTAATTGGAGCCGGGCTAATTGTGTGTGGCGTGTACATGGTGCTATGGGGTAAGAGCAAAGAAATGAAAAAGGTGAATCACTTGGTGTCTTCAGAAATCAGCCAAGAACATAAAGCAAGTGAGGTTGTTGTCATGTCCCCCATGACAAATAATGACAATGGTGACTGCTGTGACAAATACACACACCAGCCAAGGTTTCATGACGATTCATCGAATGCATTATAA 1164 0.4235 MNDVWKLVDRLKPTLLMVLVQIVYASVNVLYKLAINDGMSIRVVTAYRLIFALPFTFLLALVFDRKNRPKLTWRVLFMSFFCGLFGASILHNLFLEALDLVSATFATAVYNLTPAVTFILAIFCGLEKLNMQTAAGKAKVLGTIIGIGGSMLLTFFKGVEINLWTFRINLLHQNGQIATMHTGSGGKKLLGFLCGFGGCFSFALWLIIQAKMSKEYTSQYSSTALMTLMGAIQATAFALCVEKDWSQWKLGWNIRLLTAAYSGIVASGAMVIIIAWCVRMRGPMFASVFNPLMLVLVAIAGSLMLVENLYVGSVIGAGLIVCGVYMVLWGKSKEMKKVNHLVSSEISQEHKASEVVVMSPMTNNDNGDCCDKYTHQPRFHDDSSNAL. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05281 387 Pfam EamA-like transporter family 190 328 IPR000620 GO:0016020
Seca12g05281 387 Pfam EamA-like transporter family 13 153 IPR000620 GO:0016020
Seca12g05281 387 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 153 - -
Seca12g05281 387 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 333 - -
Seca12g05281 387 PANTHER WAT1-RELATED PROTEIN 13 343 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05281 Seca-Chr12 142199033 142201966 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05281 1 354 Nodulin-like Gene Family AT1G68170 42.577 2.27e-92 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05281 - - gmx:100813812 545.428