Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05278 ATGAAGTCGGATACATGGAAACCAGCCTTGCTAATGGTGGCTGTGCAGATCACATTTTCTGCTTGCAATGTGATCTACAAACTTGCCATAAATGATGGAATGAGCACCATTGTCATTGCAGCCTACCGTATGGCCTTCGCAGCGCTTACCACTATTCCTCTTGCTCTTATTTTTGAGAGGAACAAGAGACCGAAGATGACTTGGAGGGTGTTTTTGTTGTCAAATCTCAGTGGACTATTTGCCGGAACTTTATTTCAAAACCTATTCTATGGGGCCCTGGTTTTGACATCAGCAACGCTTGTGTCCGCAATCTACAACCTTATTCCCACTATGACATTTATCTTAGCTGTTTCCTTCGGTTTGGAAAAATTAAATTGGAGAGCAGCATCAGGAAAGGCCAAGGTGATAGGAACTTTACTTGGACTTGCCGGGGCATTGCTTCTTACATTTTACAAAGGAATAGAATTTGATATTTGGCCTTTTTATGTCAACCTTTTGGACCAAAATGGGCAACTGCCTGATACTACTAATGATTTGTTGGGTGTTGTATGCGTCGTAATAAGCTGCCTCTGTTTCTCTTTGTGGCTCATCATTCAGGCTAAGATCAGTGAAGTATACCCATGCCCTCAGTCAAGCATAGCTTTGATGTCTACAATTGGAACAGTACAATGCGTTATTCTAGGGTTTATTGTTGACAGCGATTTGAACCAATGGAGACTTGATTGGGATATTAGGCTCATCACCGTGCTTTTTTCGGGAATTTTGGCCTCCGGATTAATGATCCTTGTCATTGGATGGGTGGTACAGACGAAAGGGCCTTTATTTGCTTCGGCTTTCAACCCTCTAATGCTTTTGATTGTGGCTGTCGTCGCTTCTATGTTGTTGGATGAGAAGTTAAATTTAGGAAGTGTGCTAGGAGGAGTGCTGATTGTGTGTGGCCTATACACGGTGCTATGGGGTAAGAGCAGAGAAGCGCAGAAGAATGCTCATGAATTAGAGCCACCAGAAATATTTGGAGATTCAGAAGCAACAAGGCCGTTGTTAAATCCATGA 1053 0.4283 MKSDTWKPALLMVAVQITFSACNVIYKLAINDGMSTIVIAAYRMAFAALTTIPLALIFERNKRPKMTWRVFLLSNLSGLFAGTLFQNLFYGALVLTSATLVSAIYNLIPTMTFILAVSFGLEKLNWRAASGKAKVIGTLLGLAGALLLTFYKGIEFDIWPFYVNLLDQNGQLPDTTNDLLGVVCVVISCLCFSLWLIIQAKISEVYPCPQSSIALMSTIGTVQCVILGFIVDSDLNQWRLDWDIRLITVLFSGILASGLMILVIGWVVQTKGPLFASAFNPLMLLIVAVVASMLLDEKLNLGSVLGGVLIVCGLYTVLWGKSREAQKNAHELEPPEIFGDSEATRPLLNP. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05278 350 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Seca12g05278 350 SUPERFAMILY Multidrug resistance efflux transporter EmrE 42 152 - -
Seca12g05278 350 SUPERFAMILY Multidrug resistance efflux transporter EmrE 242 323 - -
Seca12g05278 350 PANTHER WAT1-RELATED PROTEIN 7 325 IPR030184 GO:0016020|GO:0022857
Seca12g05278 350 Pfam EamA-like transporter family 8 149 IPR000620 GO:0016020
Seca12g05278 350 Pfam EamA-like transporter family 180 318 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05278 Seca-Chr12 142095260 142106935 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05278 7 327 Nodulin-like Gene Family AT1G25270 41.049 2.11e-84 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05278 - - mtr:25493309 542.732