Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05272 ATGTGTATATATAGTAGTTCTTTACTCTCAACTCAAGCACCTTGCAGCACAATCATGGAGAAGAAGAACATGTGGGATACATGGGCACCAGCCTTGCTAATGGTGGCTGTGCAGATCATATTTTCTGCTTGCAATGTGATCTACAAACTCGCCATAAATGATGGAATGAGCACTATTGTTATTGCAGCTTACCGTATGGCCTTCGCAGCGCTTACCATTATTCCTCTTGCTCTTATTTTTGAGAGGAAGAAGAGACCGAAGATGACTTGGAGGGTGTTTTCCATGTCAACTCTAAGTGGACTATTTGTTGGAGCTTTATTTCAAAACCTGTTCTACGGAGCACTGGTTTTGACGTCAGCAACTATTGTCTCTGCCATTTACAACCTCATTCCCACCATGACTTTTATCTTAGCTGTATCCTTCGGCTTCGAAAAATTAAATTGGGGAGCAACAACAGGAAAGGCCAAGGTTGTAGGAACTTTACTTGGACTTGTTGGAGCAATGCTGCTGACTTTTTACAAAGGGGTAGAATTTGATATTTGGCCTTTCGATATCAACCTTTTGGATCCACAACAGAATTCAATTGGAGACGTGGCTGATACTTCTAGTGAATTGTTGGGTGCTCTATGTGTGGTAGTGAGCTGCCTCTGTTTTTCTCTCTGGCTAATCATTCAGGCTAAGATCAGTGTAGAATATCCATGCCCTATGTCAAGCACAGCTTTGATGTCTACATTAGGAGCAATACAGTGCTTTATTTTTGGTTTTATTGTTGAGACGGATTTGAACGAATGGAAATTGGATTGGGATATTAGGCTCCTAACCGTCACCTTTTCGGGAATTTTGGCCTCAGGATTAATGATTCTAGTCATGGCATGGTGTGTAAAGACGAAAGGGCCTTTATTTACGTCGGCTTTTAACCCTCTAATGCTTTTGATTGTGGCTGTCGCTGCTTCTATGCTGTTGGATGAAAAGTTAAATTTAGGAAGTGTACTAGGAGGAGTGTTGATTGTGTGTGGCTTGTACACGGTGCTATGGGGTAAGAACAGAGAAGCTCAAAATAAGACTCTGTTAGAGCCATCAGAGATCACCGTTGATTCTGAAGTAACGAGGCCGTTGTTAGATCCATGA 1128 0.4193 MCIYSSSLLSTQAPCSTIMEKKNMWDTWAPALLMVAVQIIFSACNVIYKLAINDGMSTIVIAAYRMAFAALTIIPLALIFERKKRPKMTWRVFSMSTLSGLFVGALFQNLFYGALVLTSATIVSAIYNLIPTMTFILAVSFGFEKLNWGATTGKAKVVGTLLGLVGAMLLTFYKGVEFDIWPFDINLLDPQQNSIGDVADTSSELLGALCVVVSCLCFSLWLIIQAKISVEYPCPMSSTALMSTLGAIQCFIFGFIVETDLNEWKLDWDIRLLTVTFSGILASGLMILVMAWCVKTKGPLFTSAFNPLMLLIVAVAASMLLDEKLNLGSVLGGVLIVCGLYTVLWGKNREAQNKTLLEPSEITVDSEVTRPLLDP. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05272 375 Pfam EamA-like transporter family 206 344 IPR000620 GO:0016020
Seca12g05272 375 Pfam EamA-like transporter family 31 171 IPR000620 GO:0016020
Seca12g05272 375 SUPERFAMILY Multidrug resistance efflux transporter EmrE 268 349 - -
Seca12g05272 375 SUPERFAMILY Multidrug resistance efflux transporter EmrE 64 174 - -
Seca12g05272 375 PANTHER WAT1-RELATED PROTEIN 30 351 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05272 Seca-Chr12 141743142 141745801 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05272 23 366 Nodulin-like Gene Family AT1G68170 41.193 3.14e-85 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05272 - - mtr:25493309 553.903