Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05271 ATGGAGGAGAAGGGTAAAAAAACCAAAGGAAAACAAAAGATAGAGATTAAGAAGATTGATAAAGCAAATGATCTTTCTAGTACTTTCGCAAAGCGAAAATATGGTGTTCACAAGAAGGCTTGTGAGTTATCAACACTTTGTGGGGCTGGGGTTGATATACTCATGTTTTCTCCTTGTGGAAGATCATTCTGTTATGGGGATCCTTCTCTTCGATTGTTGACAAGGACAAATGTAGATGATGAGCACCCTTTAGAAGGTGTCAACTATGATCAACTTGTAGAGGATCACAAGAGATCGGAGATCGATGAACTCAACAAAAAACATGATGCACTTCAAGATCAATTGTATGTTGAGAAAGCACGTGAGAAAAAACTAAAGGACATATTGAAGCAGAGGAAAAACGATGGCTGGTGGGAGGCCAAAGTGCAAGCTCTTAGTTGTGAACATGTTGAGGAAATGGAAGCAAGTCTTTTAGAATTACATGAAAAATTTTCAAATGAACTTTCAATCAAGTGTGGAGGAAATGTTTCTCATGGAGAAGATTCATTTGCTGTTGTCTCTCCTCCAAGCCAAGGAGATGATCCATTTCTACACAACACAAGTAATGAGAATGTTGATGAAAGTGACAATCATGCTCTTATTACTTTCTCCCCATCAAATCAACACTAA 669 0.3797 MEEKGKKTKGKQKIEIKKIDKANDLSSTFAKRKYGVHKKACELSTLCGAGVDILMFSPCGRSFCYGDPSLRLLTRTNVDDEHPLEGVNYDQLVEDHKRSEIDELNKKHDALQDQLYVEKAREKKLKDILKQRKNDGWWEAKVQALSCEHVEEMEASLLELHEKFSNELSIKCGGNVSHGEDSFAVVSPPSQGDDPFLHNTSNENVDESDNHALITFSPSNQH. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05271 222 Gene3D - 22 83 IPR036879 GO:0003677|GO:0046983
Seca12g05271 222 Coils Coil 94 121 - -
Seca12g05271 222 PANTHER MADS BOX PROTEIN 11 163 - -
Seca12g05271 222 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Seca12g05271 222 MobiDBLite consensus disorder prediction 199 222 - -
Seca12g05271 222 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Seca12g05271 222 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Seca12g05271 222 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Seca12g05271 222 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Seca12g05271 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 63 IPR002100 GO:0003677|GO:0046983
Seca12g05271 222 SUPERFAMILY SRF-like 10 71 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05271 Seca-Chr12 141721685 141722562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05271 2 177 Type I MADS-box Gene Family AT3G04100 33.696 3.16e-26 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca12g05271 SRF-TF 6.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05271 - K12412 gmx:102665718 166.392