Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05268 ATGAGAGATTCACGGAACCTATTGCAAGGGTTGAAGCCTGTGTTGCTTATGGTTTTGGTGCAGATTTTTTTGACAGTGGCGAATTTGCTGAACAAGATGGCAATAAGTGATGGAATGCACGTTCCTGTAATCACTGCCTACCGATTTATTTTTGGAACTGCTTGCACTCTTCCCCTTGCTCTTCTTTTTGAAAGAAAGAGTAGACCACCATTGACATGGAGGGTGCTGTTCATGTCATTTCTTTGCGGCCTCTTTGGAGGGGCTTTATTCCAAAACCTTTACTTCAGTGCTTTGGCTTTGATATCAGCAACATTTGCTGTCGCCATATATAATCTCGTTCCAACTATCACTTTCATCCTTGCTATCTTGTGCGGGTTGGAAAAGTTAAATATAACAACAGCAACAGGGATGGTCAAGGTGTTGGGAACCGTAGTTGGACTTGGCGGGTCAATGCTTCTTACATTTTTCAAAGGGGCACAAATTAACATTTGGACCTTCCACATTAATCTTTTACATCACAATCAATATGGCCATGTAGGAACACCGAATCATGACCATAGAAGAATATTGGTTGGTGTTTTATGTGGTTTTGGAAGTTGTTTCAGTTTTTCAATATGGCTCATTATTCAGGCTAAGATGAGTAAAGAATATCCAAGTGATTACTCAGGCACAACATTGATGATCTTAATGGGAGCAATACAATCCACTGCCTTTGCCCTTTGTTTTGAGAAGGATTGGAGTCAATGGAAGTTGGGTTGGAATATTAGGACTCTTAATGCAGCTTATTCGGGAATTGTGGGCTTATTAATTATTGCCATTGCGTGGTGTGTGCGGAAGAGAGGTCCAGTGTTTGCATCTGCTTTCAACCCTCTTTGCCTTGTTCTTGTGGTTGTTTCTGCTTCCATGTTTTTAGATGAGAACCTATACGTAGGAAGTGTGATTGGAGGAGTGTTAATTGTATGTGGCTTGTACATGGTGCTATGGGGTAAGAGCAAAGAAATTACAAAGGCGACAGCCTTGGTGTCATCAGAATTAGAAGAAGCGACTAACGTTGTTGTCATGTCTACAACAATAGATCATGACAATAGTGACTGCAACAACAATAGATCTAACGACTAA 1119 0.4084 MRDSRNLLQGLKPVLLMVLVQIFLTVANLLNKMAISDGMHVPVITAYRFIFGTACTLPLALLFERKSRPPLTWRVLFMSFLCGLFGGALFQNLYFSALALISATFAVAIYNLVPTITFILAILCGLEKLNITTATGMVKVLGTVVGLGGSMLLTFFKGAQINIWTFHINLLHHNQYGHVGTPNHDHRRILVGVLCGFGSCFSFSIWLIIQAKMSKEYPSDYSGTTLMILMGAIQSTAFALCFEKDWSQWKLGWNIRTLNAAYSGIVGLLIIAIAWCVRKRGPVFASAFNPLCLVLVVVSASMFLDENLYVGSVIGGVLIVCGLYMVLWGKSKEITKATALVSSELEEATNVVVMSTTIDHDNSDCNNNRSND. 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05268 372 Pfam EamA-like transporter family 12 145 IPR000620 GO:0016020
Seca12g05268 372 Pfam EamA-like transporter family 191 327 IPR000620 GO:0016020
Seca12g05268 372 PANTHER WAT1-RELATED PROTEIN 12 338 IPR030184 GO:0016020|GO:0022857
Seca12g05268 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 147 - -
Seca12g05268 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05268 Seca-Chr12 141671293 141673524 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05268 11 369 Nodulin-like Gene Family AT1G25270 38.504 1.31e-84 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05268 - - lja:Lj4g3v0336250.1 451.825