Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05262 ATGAATGATGCATTGAAGCCTGTTCTGCTTATGGTGTTTGTGCAGGTTGCGTATGCTACTGGGAATTTGATCTACAAGCTCGCCATCAACGATGGAATGAGCATTAGCGTTATCACTGCCTACCGCTTAATTTTCGGACTTGTTTCATCTCTTTTTCTCGCTCTTATTTTTGAAAGAAAGAGCAGACCACCGCTGACGTGGAGGGTCCTGTTGATGTCAATTCTTTGCGGCCTGTTTGGAGGGAGTTTATTCCAAAACCTTTTTGTCAATGCTTTGGATTTGATATCAGCAACATTTGCTACCGCCATTTTTAATCTCGTTCCTGCCCTCACTTTTATCCTTGCAGTATTGTGCCGCTTGGAAAAGTTAAATATGAAAACAGCAGCAGGGATGGTGAAGGTGTTGGGAACTGTAGTTGGAATTGGCGGGTCAATGGTGCTGACATTTTTCAAAGGGGCACAAATTAACATATGGACCTTCCACGTTAATCTTATGCATCAAAATCAAAATGGCCACATAGTAACACAGAATGCTGACAGTACAAGAAAAATTCTTGGTGTTGTATGTGGTCTTGGAAGTTGCCTGAGTTTTTCATTATGGCTCATCATTCAGGCTAAGATGAGTAAAGAATATTCAAGCCAATACTCAAGCACAACATTGATGACCTTAATGGGGGCAATACAAGCCACTGCTTATGCCCTTTGTGTTGAGAAAGATTGGAGTCAATGGAGGTTGGGATGGAGTATTAGGCTTCTTGCTTCGGTTTATTCGGGGATTGTGGTCTCTGGAATAGTGATTATCATCACTGCATGGTGTGTACAGATGAGAGGTCCATTGTTTGCATCTATTTTCAACCCTCTTTGCCTTGTGGTGGTGGCTGTTGCTGGTTCCATGTTGTTAGATGAGAAACTATATGTAGGAAGTGTGATTGGAGGAGTGATAATTGTGGGTGGCTTGTACATGGTGCTGTGGGGTAAGAGCAAAGAAACTAAAAAGATGAATTTGGTGTCACCAGAGAATACCCAAGAATTTGAAGGGATTGAGGTTGTTAATGTCAGGTCTACGTCTGAAGATCATGACAATGGTGACTGCAGCAACAATAGTAAGAGCATTAATAATATTGTTACAAAGGTTAATGATGATGAATCTTCGAAAAGTGGACATCAATCGAATGACATTGACAATGCCAACGTGGAAACCGAAGAAAAAGGAGGTAGCTAA 1221 0.4144 MNDALKPVLLMVFVQVAYATGNLIYKLAINDGMSISVITAYRLIFGLVSSLFLALIFERKSRPPLTWRVLLMSILCGLFGGSLFQNLFVNALDLISATFATAIFNLVPALTFILAVLCRLEKLNMKTAAGMVKVLGTVVGIGGSMVLTFFKGAQINIWTFHVNLMHQNQNGHIVTQNADSTRKILGVVCGLGSCLSFSLWLIIQAKMSKEYSSQYSSTTLMTLMGAIQATAYALCVEKDWSQWRLGWSIRLLASVYSGIVVSGIVIIITAWCVQMRGPLFASIFNPLCLVVVAVAGSMLLDEKLYVGSVIGGVIIVGGLYMVLWGKSKETKKMNLVSPENTQEFEGIEVVNVRSTSEDHDNGDCSNNSKSINNIVTKVNDDESSKSGHQSNDIDNANVETEEKGGS. 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05262 406 Pfam EamA-like transporter family 6 141 IPR000620 GO:0016020
Seca12g05262 406 Pfam EamA-like transporter family 185 323 IPR000620 GO:0016020
Seca12g05262 406 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 141 - -
Seca12g05262 406 MobiDBLite consensus disorder prediction 355 406 - -
Seca12g05262 406 SUPERFAMILY Multidrug resistance efflux transporter EmrE 240 328 - -
Seca12g05262 406 MobiDBLite consensus disorder prediction 365 380 - -
Seca12g05262 406 PANTHER WAT1-RELATED PROTEIN 6 337 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05262 Seca-Chr12 141488846 141490912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05262 1 376 Nodulin-like Gene Family AT1G68170 41.379 2.05e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05262 - - lja:Lj4g3v0336250.1 506.523