Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05257 ATGGCCGGAAGTGTTGATGTTCTAGCTCAAGATTCAAGTATCAATGGAGCAATATTGAAACTGTTGGCTGAGGATTTCAATCACAAGGTGTTTATCAAAGATCTTGCACCCCCAACAATGGGAGAGAATGGCATTGTCAAAGGGGAGGCTCATCAGAATCAGAAAAGTACAGAGAAAAGTGAAGGAAAGATAGTGCTGGGAAGAAATATTCATACCATGTGCCTAGAAGTGAAGGAGCCAGATAGTGATGAAGAGGTTACTGGGGAAAGAGAAGCTTATATGGCAAGTGTGTTAGCTAAATACAAAAGATCTCTCACAGAAAGGACCAAGTATCATTTAGGATACCCCTATAATTTGGATTTTGACTATGGTGCACTCTCTCAACTTCAGCACTTTTCAATAAACAACCTAGGAGATCCATTTATTGAAAGCAATTATGGTGTTCACTCAAGGCAATTTGAAGTTGGTGTTTTGGATTGGTTTGCTCGGTTGTGGGAACTAGAGAAAAATCAGTACTGGGGCTATATAACAAATTGTGGCACTGAAGGCAATCTCCATGGCATCCTAGTTGGAAGAGAGGTCTTCCCAGATGGGATTTTATATGCCTCACAAGAGTCACATTATTCTGTTTTTAAAGCTGCTCGTATGTACAGAATGCAATGTGTGAAGGTTAACACTCTCTGTTCTGGTGAGATTGATTGTGATGATTTTAAGGCCAAGCTTCTTTGTCACAAGGACAAGCCAGCAATTGTAAATGTCAACATTGGCAAGTTTCTTTCCTTTCTTACAACTGTGAAAGGAGCTGTGGATGATCTTGATGTAGTTATAAAGAAACTTGAAGAAGCAGGATTTTCTCATGACAGGTTCTACATACATTGTGATGGTGCTTTGTTTGGTCTCATGATTCCTTTTGTCAAACGTGCTCCAAAAGTTTCTTTTAAGAAACCTATTGGTAGTGTTAGTGTTTCTGGCCACAAATTTGTAGGGTGCCCCATGCCTTGTGGAGTGCAGATAACAAGATTGGAGCATATTAATGCACTTTCCAGGAATGTAGAATACCTTGCTTCAAGGGATGCTACAATAATGGGCAGTAGGAATGGCCATGCTCCCATATTCCTTTGGTATAGTTTAAACAGGAAAGGATACAGAGGTTTTCAAAAGGAAGTGCAAAAATGCTTGAGGAATGCACACTACTTCAAAGATCGCCTTGTAGATGCTGGGATTGGAGCAATGCTTAATGAGTTGAGTAGCACTGTTGTATTTGAGAGGCCACATGATGAGGAGTTTGTGCATAAGTGGCAATTGGCATGCCAAGGGAACATTGCACATGTTGTAGTGATGCCAAATGTCACCATAGAGAAGCTTGATGATTTTCTAAATGAACTTGTGCACAAGCGTGCTGAGTGGTTTCAAGATGGGAAGTGTCAACCTTATTGTATAGCATCTGCTGTTGGTGTAAAAAATTGTGTTTGTGCTTTGCATAGATGA 1488 0.4032 MAGSVDVLAQDSSINGAILKLLAEDFNHKVFIKDLAPPTMGENGIVKGEAHQNQKSTEKSEGKIVLGRNIHTMCLEVKEPDSDEEVTGEREAYMASVLAKYKRSLTERTKYHLGYPYNLDFDYGALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKNQYWGYITNCGTEGNLHGILVGREVFPDGILYASQESHYSVFKAARMYRMQCVKVNTLCSGEIDCDDFKAKLLCHKDKPAIVNVNIGKFLSFLTTVKGAVDDLDVVIKKLEEAGFSHDRFYIHCDGALFGLMIPFVKRAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHINALSRNVEYLASRDATIMGSRNGHAPIFLWYSLNRKGYRGFQKEVQKCLRNAHYFKDRLVDAGIGAMLNELSSTVVFERPHDEEFVHKWQLACQGNIAHVVVMPNVTIEKLDDFLNELVHKRAEWFQDGKCQPYCIASAVGVKNCVCALHR. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05257 495 PANTHER - 52 495 - -
Seca12g05257 495 FunFam Serine decarboxylase 1 128 377 - -
Seca12g05257 495 SUPERFAMILY PLP-dependent transferases 108 468 IPR015424 -
Seca12g05257 495 Gene3D Aspartate Aminotransferase, domain 1 371 466 IPR015422 GO:0003824
Seca12g05257 495 Gene3D - 146 366 IPR015421 GO:0003824
Seca12g05257 495 Pfam Pyridoxal-dependent decarboxylase conserved domain 199 414 IPR002129 GO:0016830|GO:0019752|GO:0030170
Seca12g05257 495 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 319 340 IPR021115 GO:0016831
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05257 Seca-Chr12 141394177 141397251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05257 212 401 Calmodulin-binding Proteins AT1G65960 25.628 1.41e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05257 K25193 - gmx:100792053 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05257 12 141394177 141397251 Seca6g05176 6 118807192 118812310 PCT