Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05252 ATGCATGCCAATGGTGTGGAGCCAAAACCAAGAGATGCGGTTGAAGAGATTGACTACTCTCAAAGGGGTCAGTGGCTTAGAGCAGCAATGTTGGGAGCCAATGATGGGTTAGTCTCAGTTGCATCACTGATGATGGGTGTTGGAGCAGTGAAGGAAGACATAAATGCCATGCTTCTTGCTGGTTTTGTTGGCATAGTAGCTGGTGATTGTAGTATGGCAATTGGAGAGTTTGATGAAGAAGCTCAAAGGGAGAAGCTTCCAAACCCATTTCAGGCTGCACTTGCATCAGCACTTGCATTTTCTGTGGGTTCTCTGGTGCCACTGCTAGCTGCTATGTTTATAACGAATCACAAGATAAGGATGGGTGTTGTGCTTGGAAAAACTCCAGTGAGGGATCTTGTGTTAGGGTGTTGA 414 0.4614 MHANGVEPKPRDAVEEIDYSQRGQWLRAAMLGANDGLVSVASLMMGVGAVKEDINAMLLAGFVGIVAGDCSMAIGEFDEEAQREKLPNPFQAALASALAFSVGSLVPLLAAMFITNHKIRMGVVLGKTPVRDLVLGC. 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05252 137 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 16 77 IPR008217 GO:0005384|GO:0030026
Seca12g05252 137 Pfam VIT family 26 77 IPR008217 GO:0005384|GO:0030026
Seca12g05252 137 Pfam VIT family 83 118 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05252 Seca-Chr12 141300719 141301214 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05252 11 136 Nodulin-like Gene Family AT3G43660 52.778 1.46e-48 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05252 K22736 - gmx:100802489 178.718