Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05251 ATGGCCTCCCTTGAAGCTAGAACTAATGGAATTTCCAATAGTTATATTGAGATCCCTATCCATGCCAATGGTGTGGAGCCAAAACCAAGCCAAGGGGTTGAAGAGATTGATTACTCTCAAAGGGGTCAATGGCTTAGAGCAGCAGTGTTGGGAGCCAATGATGGGTTAGTCTCAGTTGCATCACTGATGATGGGTGTTGGAGCAGTGAAGGAAGACATAAATGCCATGCTTCTTGCTGGTTTTGCTGGCTTAGTAGCTGGTGCTTGTAGTATGGCAATTGGAGAGTTTGTCTCTGTCTACACTCAGTATGACATTGAGATGGCTCAGATTGAAAGAGAGAGTGAAACTAATAATAATAATGATGAAGAAGCTCAAAGGGAGAAGCTTCCAAACCCATTCCAGGCTGCACTTGCATCAGCACTTGCATTTTCTGTGGGTGCTCTGGTGCCACTGCTAGCTGCTATGTTTATAAGGAATCACAAGATAAGGATGGGAGTTGTTGCTGCTGTGGCTAGTTTGGCTTTGTTGGTGTTTGGAGGGGTTGGTGCAGTGATTGGAAAAACTCCAGTGAGGAGATCTTGTGCCTCCCTTGAAGCTAGAACTAATGGAATTTCCAATAACCATATTGAGATCCCTATCCATGCCAATGGTGTGGAGCCAAAACCAAGCCAAGGGGTTGAAGAGATTGATTACTCTCAAAGGGGTCAGTGGCTTAGAGCAGCAGTGTTGGGAGCCAATGATGGGTTAGTGTCAGTTGCATCACTGATGATGGGTGTTGGAGCTGTGAAGGAAGACATAAGTGCCATGCTTCTAGCTGGTTTTGCTGGCTTAGTAGCTGGTGCTTGTAGTATGGCAATTGGAGAGTTTGTCTCTGTCTACACTCAATATGACATTGAGATGGCTCTGATTAAAAGACAGAGTGAAACTAATAATAATAATGAAGAAGCTCAAAGGGAGAAGCTTCCAAACCCATTTCAGGCTGCACTTGCATCAGCACTTGCATTTTCTGTGGGTGCTTTGGTGCCACTGCTAGCTGCTGTGTTTATAAGGAATCACAAGATAAGGATGGGTGTTGTTGCTGCTGTGGCTAGTTTGGCTTTGTTGGTGTTTGGAGGGATTGGAGCAGTGCTTGGAAAAACTCCAGTGAGGAGGTCTTGTGTTAGAGTACTCATTGGAGGTTGGATGGCTATGGCCATAACATTTGGCCTCACCAAATTGATTGGCTCCTCTGGAATTTAA 1239 0.4504 MASLEARTNGISNSYIEIPIHANGVEPKPSQGVEEIDYSQRGQWLRAAVLGANDGLVSVASLMMGVGAVKEDINAMLLAGFAGLVAGACSMAIGEFVSVYTQYDIEMAQIERESETNNNNDEEAQREKLPNPFQAALASALAFSVGALVPLLAAMFIRNHKIRMGVVAAVASLALLVFGGVGAVIGKTPVRRSCASLEARTNGISNNHIEIPIHANGVEPKPSQGVEEIDYSQRGQWLRAAVLGANDGLVSVASLMMGVGAVKEDISAMLLAGFAGLVAGACSMAIGEFVSVYTQYDIEMALIKRQSETNNNNEEAQREKLPNPFQAALASALAFSVGALVPLLAAVFIRNHKIRMGVVAAVASLALLVFGGIGAVLGKTPVRRSCVRVLIGGWMAMAITFGLTKLIGSSGI. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05251 412 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 228 407 IPR008217 GO:0005384|GO:0030026
Seca12g05251 412 Pfam VIT family 45 126 IPR008217 GO:0005384|GO:0030026
Seca12g05251 412 Pfam VIT family 126 193 IPR008217 GO:0005384|GO:0030026
Seca12g05251 412 Pfam VIT family 318 404 IPR008217 GO:0005384|GO:0030026
Seca12g05251 412 Pfam VIT family 238 319 IPR008217 GO:0005384|GO:0030026
Seca12g05251 412 Coils Coil 105 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05251 Seca-Chr12 141277914 141287297 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05251 229 412 Nodulin-like Gene Family AT3G43660 69.022 2.15e-88 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05251 K22736 - gmx:100802489 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05251 12 141277914 141287297 Seca12g05251 12 141277914 141287297 ECH