Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05247 ATGTCAGATGTGGAAGAGTATAGATGCTTTATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAGGATACATTTGAGAAGTTTGGCAAGCTTACTGAGGCAAAGGTGGTAGTTGTTGACAAATTCTCTGGACGCTCTCGTGGGTTCGGATTTGTCACATTTGATGATAAGAAAGCAATGGAAGAAGCTATTGAAGCCATGAATGGGATGGATTTAGATGGACGGACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCAACTAGAGATGATGGTGATCGCTACCAAGAACGTGGTCGTGATCGGGGTCGTGATCGTGATCGTGACAGAGATTTCAGAGGTGGTCGAGGGTCTAATGGTGGTGAGTGCTTTAAGTGTGGTAAGCCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGGGCAAGAGGGGGAAGGTATGGTGGCAGGGAAAGTAGGTATGGTGGAAGCAGTGCTGGTGGTCACTATGGTCCAGATAGAAATGCAGACCGCTCTTCTGGTGGCCGCAACAGGGATGGTGGTAGTCATGGAGATTCGGGAAATGATCGATATTATCGTGATCGTGCTGGACCATATGAACGACGGGGATCAGGAGGCTTTCGTTGA 633 0.4755 MSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLTEAKVVVVDKFSGRSRGFGFVTFDDKKAMEEAIEAMNGMDLDGRTITVDRAQPQQGSTRDDGDRYQERGRDRGRDRDRDRDFRGGRGSNGGECFKCGKPGHFARECPSEGARGGRYGGRESRYGGSSAGGHYGPDRNADRSSGGRNRDGGSHGDSGNDRYYRDRAGPYERRGSGGFR. 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05247 210 ProSiteProfiles Zinc finger CCHC-type profile. 126 141 IPR001878 GO:0003676|GO:0008270
Seca12g05247 210 Pfam Zinc knuckle 125 141 IPR001878 GO:0003676|GO:0008270
Seca12g05247 210 SMART rrm1_1 8 82 IPR000504 GO:0003723
Seca12g05247 210 FunFam Glycine-rich RNA-binding protein RZ1A 1 121 - -
Seca12g05247 210 MobiDBLite consensus disorder prediction 76 210 - -
Seca12g05247 210 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 207 - -
Seca12g05247 210 SMART c2hcfinal6 125 141 IPR001878 GO:0003676|GO:0008270
Seca12g05247 210 Gene3D - 2 121 IPR012677 -
Seca12g05247 210 MobiDBLite consensus disorder prediction 171 203 - -
Seca12g05247 210 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Seca12g05247 210 Gene3D - 122 180 - -
Seca12g05247 210 MobiDBLite consensus disorder prediction 89 119 - -
Seca12g05247 210 FunFam Glycine-rich RNA-binding protein 10 122 180 - -
Seca12g05247 210 SUPERFAMILY RNA-binding domain, RBD 4 114 IPR035979 GO:0003676
Seca12g05247 210 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 80 IPR000504 GO:0003723
Seca12g05247 210 SUPERFAMILY Retrovirus zinc finger-like domains 108 143 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05247 Seca-Chr12 141235306 141240785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05247 9 85 Eukaryotic Initiation Factors Gene Family AT4G34110 40.260 1.39e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05247 - - gmx:100815224 305.064