Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05238 ATGGACGAGTTGTCCAAGAACCAGATATTTGCTCTTCATGGGATTGCTGGTGCTGGGTCAGTGGCTTTAGCCACAGGTTTCACCTATCCTCTTGACACCATCAAAGTCCTCACTCAGGTTGGTTCCAGTGCCAGTAAAGAATTGAACGCTGCCCAGGTTTTGATGAGGGTACTCTCTGTGTCGGGTAATGCAGGCCTGTTCTATGGTTTTGGCTGGTTGGCTTTTGGAAGGATTTTTGGTCTGGGAGTTCGATTTGGGGTTTACGAAATCCTGACAGCCTTTTATAAAGATGGTCGGGAGGATAATTATCTCTATGCTTCTGAGGCTCTTTTGGCTGGCATGGTAGCTGGTGCCACAGAGACATTCATAAGCTCTCCATTTGAACTCATCAAGCTTCGTATGCAGGTTACCTCTGCTTCATATGTTCCAAGCTCTAAGTTTGCTTTGGAAGAGGGGGCCCGCAAACCTTTAATTGCAAGATTACTTAATGGCTGCTATCCAGACAAGAGGTCTTTGAACCAATATGTTAGTCTCATCTCCACCCTAACAACCAAAAATACTAACATATCGGGTGCTTTACTGGAGTATCCATGGACAATGACAGGATCTGGGAAGCCACCATCAGTTTGCAATGTGAGAAGGCCATTAGACATTATATCTTTGGAAGGATGGAGCACATTATGGAGAGGTTTTCGTTCTGGAATTGTTCGAGATTCTGTGTTTGGTGGCATATTTTTTTCATGTTGGCAACTTTTGCACCAAGCAATGCTTGATTGGAAGGCTGTAGGGATGAATCCTCCACCCAGGTTAAATGAAGAAGTTGGCCCATTGTCTCCTTTAGCTGTTAGTCTTGCTGCTGGATTTTCAGGTTCAGTTGCTGCTGCTGCTTCTCATGGTTTTGATACTGCAAGAAGTAGATCACAATGTACTGTGCTTCCAAAGTATGTCTCAATGGAGAGAAGGTTTCTGAAGTGGAAACGACTAGGAAACAAGTTTGAAAGATATACTGGGATCCATCCTTCTGACAGGAATGTCTTGTTCCGCAGTATTGGGTTGAGGATGGCTCGCTCTGGTTTTGCATCATTCGTGATTGTAGGAAGTTATTTCTTTGTTGTTGATCAGCTTGCTCCTCGTTTGACTTAA 1143 0.4418 MDELSKNQIFALHGIAGAGSVALATGFTYPLDTIKVLTQVGSSASKELNAAQVLMRVLSVSGNAGLFYGFGWLAFGRIFGLGVRFGVYEILTAFYKDGREDNYLYASEALLAGMVAGATETFISSPFELIKLRMQVTSASYVPSSKFALEEGARKPLIARLLNGCYPDKRSLNQYVSLISTLTTKNTNISGALLEYPWTMTGSGKPPSVCNVRRPLDIISLEGWSTLWRGFRSGIVRDSVFGGIFFSCWQLLHQAMLDWKAVGMNPPPRLNEEVGPLSPLAVSLAAGFSGSVAAAASHGFDTARSRSQCTVLPKYVSMERRFLKWKRLGNKFERYTGIHPSDRNVLFRSIGLRMARSGFASFVIVGSYFFVVDQLAPRLT. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05238 380 Gene3D Mitochondrial carrier domain 11 378 IPR023395 -
Seca12g05238 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 255 IPR018108 -
Seca12g05238 380 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 17 371 - -
Seca12g05238 380 Pfam Mitochondrial carrier protein 11 96 IPR018108 -
Seca12g05238 380 Pfam Mitochondrial carrier protein 108 142 IPR018108 -
Seca12g05238 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 94 IPR018108 -
Seca12g05238 380 SUPERFAMILY Mitochondrial carrier 11 332 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05238 Seca-Chr12 141173797 141183129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05238 29 258 Antiporters AT1G79900 22.222 1.20e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05238 - - tpra:123917368 630.172