Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05237 ATGGGAGATAACAATGTCAACCTTCCACCTGGATTTCGTTTTTATCCCACAGATGAAGAGCTTGTGGTCCATTTCCTTCATAGAAAGGCTTCCCTTTTACCTTGTCATCCAGATGTCATCCCTGATCTTGACCTCTACCCATATGATCCATGGGAGCTTCATGGTAGAGCTTTGGCAGAGGGAAACCAATGGTACTACTATAGCAGAAGGACACAAAATAGGATCACTAGCAATGGTTATTGGGTGCCAATGGGAATGGAAGAACCAATTGTTACAAGCTCAAGTAACAAGAGAGTTGGTATGAAGAAATATTATGTGTTCCATTTGGGAGAAGCCCCTGATGGTAACAAAACTAATTGGATAATGCAAGAGTATAGTCTATCAGATTCTGCTTCCTCTAGCAGATCATCCAAAAAAAAAGCACAGCCAAAAAATGATCATAGTAAATGGGTGATATGTCGAGTTTATGAGCATGATGATGATCAGGATGGTGATGGAACAGAGCTCTCATGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGAAGAAGTAAGCTTGCCAAATTAG 570 0.4035 MGDNNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLDLYPYDPWELHGRALAEGNQWYYYSRRTQNRITSNGYWVPMGMEEPIVTSSSNKRVGMKKYYVFHLGEAPDGNKTNWIMQEYSLSDSASSSRSSKKKAQPKNDHSKWVICRVYEHDDDQDGDGTELSCLDEVFLSLDDLEEVSLPN. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05237 189 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Seca12g05237 189 PANTHER NAC TRANSCRIPTION FACTOR 56 8 163 - -
Seca12g05237 189 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Seca12g05237 189 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Seca12g05237 189 FunFam NAC domain-containing protein 104 17 161 - -
Seca12g05237 189 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05237 Seca-Chr12 141168884 141170492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05237 1 162 NAC Transcription Factor Family AT1G61110 41.341 1.38e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca12g05237 NAM 3.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05237 - - gmx:100813096 358.992