Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05232 ATGGAAAATGCGATTAGCAACAGCAAGATGAAGGCTTCGAAGGTGAGGACTTCGAACGAGAACGTTTCGCCGTTGCGGATCGAGTTGGAAGATAAACGTGGACGCTATCTCCAATCAACGACTATGAGTCCAAGATTTCAACCGTACGCCGAGAACATCGACGTCGGCTCGCCGCTGGCACGCTACTTATTCGCCGGATCTCCAATTACCGGGAAGGTCGCTTCCTCTGGCGAGGCCTTCACTCCTCCGACGTTCGGCTCCGGCAAGTACAGGTCCGCGAAAGCGTTACATTACAGCGGAAACAGTAGCTTCGGTTCTCGCAGTAGATTGTCGCTTTCTTCAATTGAGAACTTGGAGATCATGTCGCCGCCGGTTTACGGCACGCCGGTGAAGGTGGACGAGGAAATTCTTGTGATGGATGATATTCTGGTGAGGCCAGTGTCGGGAGGTAAGAACGGAAGGTCTTCATCTTCCTCCGGCCGGGGTTCGTCGTCGTCGTCGTCATCGTCGAAGAGCGTGTTCAAGACGGAGCTTTGCAGAGCGTGGGAGGAATCTGGAAACTGCCGCTACAACTCCAAATGCCAGATAAGAAATTTGCCCGTTGGTAATGATTCCAGAAACTTTCCTAAACCAAATTGCATTCCAAGAATCGTAGAGGTTGTTTATCCTATTCTGAGGAATCTGTTTGCACATGGAAAAGAAGAGCTTCATCCAAGTCATTTCTCCATGAAGAGCAAATTATCTATTAGAGCACGACCCTTCATATATAGCGGCCAAAGTAGCCGCACTGCAGCAGCTGCATCTGCACATCTAGTCACAACATCCCAACCAGCTTCACCTGAACCTCATAACACCCGTGCCAATTCCAACACTACCAATGACTGGTCACCCCTGGATGATGGTATTCAGGTTGTCCTCCCCAATGGTTCAGATAAAGCTCCCTCAAGGGAGGAAGTTAATGCACACATTTTCAGTGTTCTCAATAACCCGACTACTGGAAGGAGACTACCAGTATTTGCAGCACTTTGCGAGGGGCAGTAA 1041 0.4976 MENAISNSKMKASKVRTSNENVSPLRIELEDKRGRYLQSTTMSPRFQPYAENIDVGSPLARYLFAGSPITGKVASSGEAFTPPTFGSGKYRSAKALHYSGNSSFGSRSRLSLSSIENLEIMSPPVYGTPVKVDEEILVMDDILVRPVSGGKNGRSSSSSGRGSSSSSSSSKSVFKTELCRAWEESGNCRYNSKCQIRNLPVGNDSRNFPKPNCIPRIVEVVYPILRNLFAHGKEELHPSHFSMKSKLSIRARPFIYSGQSSRTAAAASAHLVTTSQPASPEPHNTRANSNTTNDWSPLDDGIQVVLPNGSDKAPSREEVNAHIFSVLNNPTTGRRLPVFAALCEGQ. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05232 346 PANTHER CCCH ZINC FINGER/TIS11-RELATED 124 246 IPR045877 GO:0003729
Seca12g05232 346 MobiDBLite consensus disorder prediction 1 26 - -
Seca12g05232 346 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 174 195 IPR000571 GO:0046872
Seca12g05232 346 MobiDBLite consensus disorder prediction 150 170 - -
Seca12g05232 346 MobiDBLite consensus disorder prediction 267 301 - -
Seca12g05232 346 ProSiteProfiles Zinc finger C3H1-type profile. 174 195 IPR000571 GO:0046872
Seca12g05232 346 Gene3D - 165 195 - -
Seca12g05232 346 MobiDBLite consensus disorder prediction 148 170 - -
Seca12g05232 346 MobiDBLite consensus disorder prediction 267 298 - -
Seca12g05232 346 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05232 Seca-Chr12 141107776 141110049 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca12g05232 zf-CCCH 4.1e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05232 - K18753 gmx:102661448 273.092