Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05227 ATGGGAAACATCGAGCGAGTAGTTTCATCTTTCATGGGTTCGTTTAGTCTTTGGGCAATTTTGGTCCTTAAGGTTTCTGGTAATGGCAATGCAGAAAGTGATGCCCTGAATGCATTGAAGACCAACTTGTTTGATCCTAACAGGTTTCTTCAAAGCTGGGATCCTACTCTTGTCAATCCTTGCACATGGTTGCATGTTACTTGCAACAGTGATGAAAGCGTGACCCGTGTTGATCTTGGAAATGCAAACCTTTCGGGTCAACTGGTTTCACAGCTTGGTCTGCTCCCAAATTTGCAACACTTGAAACTTTATAATAATAATATAACTGGGAAAATCCCAAATGAGCTTGGAAATCTGACAAATTTGGTGAGCTTGGATCTTTACTTGAACAAGTTAACAGGTTCCATTCCGGACACATTGGGCAACCTTAAAAAACTACGTGTCCTCATTCATAATTTTGCTTTCCCACAGAATATGGAGGCAGCTTATGCAGCCTATAATAAAACTATTTCAGTTCCAACAGAGGCTGTAGTATACTTAGAAGTTAGAACACGTTTGGCAAAATTGGGTCACAAGTCTGATGACAAAGGGGGTGAGGGGGGGAACATTTTCACCACATTATATGCAGATTTCCAAAGAGGCATGTATCAGTCATGCCTGGATTTAGACATTTTTTTCAATTGTGGCCAATTCACATTGCCAAGTAGAACTATTTGTTATCTATCCTGGCGTCTCAACAATAACAGCTTGTCAGGAAACATTCCTATGTCTTTGACCACTGTCGCTTCACTGCAAGTCCTTGATTTGTCAAACAACAACTTAACAGGAGACGTCCCAGTCAATGGTTCATTTACATTATTTACTCCAGACAGTTTTAACAGTAATCCTCACTTGAATAAAAGATTCATTCCAGCTCCATTGCAACAAACTACTTCAGGTGACTTTGCTACTGGAACCATTGCTGTGGTTTTTGCATTATTGTTTGTAGCCCCTGCAGTTGCACTTGCTTGTTGGCAAATAAGGAAACCACATGATCATTTCATTGATTCTCTTGATGAGGAGGATCCTGATCCTGAACTTTACCTTAGTCAGCTCAAAAGGTTTTCACTGCATGAGCTACGAAGTGCAACAAATAACTTCAAAAATATTCTGGGTAAAGGTGGATCTGGCATGGTTTATAAAGGACACTTAGCAGATGGTTCTCTTGTAGCAGTCAAAAGACTTAAAAAAAAAGGTACCCGAGGTGGGGAACTGCAATTTAAAACTGAAGTTGAAATGATTGGCATGGCTGTGCATCAAAATTTACTTCGGCTGCGTGGTTTTTGCATGACGCGCTCTGAAATGTTGCTTGTGTATCCTCTCTTGATTAATGGAAGTGTAGCATCATGGTTACGAGAGCGTCCAGAATCACAACCACCACTTGACTGGCCAACACGGAAGCGTGTTGCCTTAGGAACTGCTAGGGGGCTTGCTTATTTGCATGATCACTGTCACCCGAAGATTGTTCATCGAGATGTCAAAGCTGCTAATATTTTGTTAGATGAGGAATGTAATGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTTAAGGATTACAAAGATACTCATGTCACCACTGCTGTATATGGTACAATTGGGCATATAGCGCCAGAGTACTACTCAACTGGAAAGTTTACAGAGAAGGTTGATGTTTTTGGATATGGTGTGATGCTTCTTGAAGTAATAACTGGACAGACAGCTTTTGATCTAGCACGACTTGCTGACAATGATGATGCCAGGTTGCTTCTTTGGGTGAAAGGACTTCTGAAAGAGGAGAGGTTGGAGACATTGGTGGATGCAAATTTACAGGGAAAATATAATGAGGAGGAGGTAAAGCAGATAATCCAAGTGGCCTTGCTATGCACACAAGACTCCCCTTTGGAAAGGCCCAAGATGTCTGAGGTGGTTAGAATGCTAGAGGGTGATGGTTTGGCAGAAAAATGGGATCAATGGCAGAAAGAGGAGATTATCCGACAAGATTTCAACCTCAACTTCACCAAATTACTAAATGCTAATTGGATATTAGACTCAATTTCAAATGTCCCACCAGATGAACTATCTTTATCAGGTCCTAGATGA 2118 0.4103 MGNIERVVSSFMGSFSLWAILVLKVSGNGNAESDALNALKTNLFDPNRFLQSWDPTLVNPCTWLHVTCNSDESVTRVDLGNANLSGQLVSQLGLLPNLQHLKLYNNNITGKIPNELGNLTNLVSLDLYLNKLTGSIPDTLGNLKKLRVLIHNFAFPQNMEAAYAAYNKTISVPTEAVVYLEVRTRLAKLGHKSDDKGGEGGNIFTTLYADFQRGMYQSCLDLDIFFNCGQFTLPSRTICYLSWRLNNNSLSGNIPMSLTTVASLQVLDLSNNNLTGDVPVNGSFTLFTPDSFNSNPHLNKRFIPAPLQQTTSGDFATGTIAVVFALLFVAPAVALACWQIRKPHDHFIDSLDEEDPDPELYLSQLKRFSLHELRSATNNFKNILGKGGSGMVYKGHLADGSLVAVKRLKKKGTRGGELQFKTEVEMIGMAVHQNLLRLRGFCMTRSEMLLVYPLLINGSVASWLRERPESQPPLDWPTRKRVALGTARGLAYLHDHCHPKIVHRDVKAANILLDEECNAVVGDFGLAKLKDYKDTHVTTAVYGTIGHIAPEYYSTGKFTEKVDVFGYGVMLLEVITGQTAFDLARLADNDDARLLLWVKGLLKEERLETLVDANLQGKYNEEEVKQIIQVALLCTQDSPLERPKMSEVVRMLEGDGLAEKWDQWQKEEIIRQDFNLNFTKLLNANWILDSISNVPPDELSLSGPR. 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05227 705 Gene3D Transferase(Phosphotransferase) domain 1 455 672 - -
Seca12g05227 705 Gene3D Ribonuclease Inhibitor 29 305 IPR032675 -
Seca12g05227 705 FunFam Somatic embryogenesis receptor kinase 1 28 155 - -
Seca12g05227 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672|GO:0006468
Seca12g05227 705 SMART serkin_6 378 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05227 705 ProSiteProfiles Protein kinase domain profile. 378 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05227 705 Pfam Protein tyrosine and serine/threonine kinase 380 652 IPR001245 GO:0004672|GO:0006468
Seca12g05227 705 SUPERFAMILY L domain-like 32 295 - -
Seca12g05227 705 ProSitePatterns Protein kinases ATP-binding region signature. 384 406 IPR017441 GO:0005524
Seca12g05227 705 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Seca12g05227 705 ProSiteProfiles Leucine-rich repeat profile. 97 120 IPR001611 GO:0005515
Seca12g05227 705 Gene3D Phosphorylase Kinase; domain 1 350 453 - -
Seca12g05227 705 FunFam Somatic embryogenesis receptor kinase 1 347 454 - -
Seca12g05227 705 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 18 662 - -
Seca12g05227 705 FunFam Somatic embryogenesis receptor-like kinase 1 455 672 - -
Seca12g05227 705 SUPERFAMILY Protein kinase-like (PK-like) 359 653 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05227 Seca-Chr12 141031470 141038310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05227 17 705 Receptor kinase-like Gene Family AT4G33430 61.790 0.0 797
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca12g05227 PK_Tyr_Ser-Thr 6.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05227 K13416 K13418 nnu:104600033 646.351