Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05224 ATGGATGCTTTATCCTTAACCTCAAGCTTAAGCATTTCCAAGCAATTTCAATGTCTTCCACTCTCAAGTAAACAGCAAAGAACTTCTCAGGTGCACTTCAGTGTTTCATGCAGATCCACCACAATAAGCACCAAAGGAAATTTCTACAAAATGTTGTCTCTGAGTCCTGGAAGTGCAACAAAGGATGAGATAAAGAGGGCTTATAGATCAATGGCTCTTCAGTACCATCCTGATGTGTGCCATGATCCTTCAATGAAAGAGGAGTCAACTAGGATGTTTGTTCAGCTAAATACAGCTTATGAGACACTGTCAAATCCTGTGCTTAGAGCACAGTATGATTGTGAATTGGGTTTGAGAAACAACATGGTCAGTGTTAGTGGTGATGAAAGATGGGGAGAGGGTAGGTGGCAGGAGCAAGTGATTGAGTTGAAGAAAAGGTCTCGCAGACGTATGGGACAAAAAGGGGGATCATGGGGCACCAGAATGAGGACACACATGAAAGAGAGGAATTAA 513 0.425 MDALSLTSSLSISKQFQCLPLSSKQQRTSQVHFSVSCRSTTISTKGNFYKMLSLSPGSATKDEIKRAYRSMALQYHPDVCHDPSMKEESTRMFVQLNTAYETLSNPVLRAQYDCELGLRNNMVSVSGDERWGEGRWQEQVIELKKRSRRRMGQKGGSWGTRMRTHMKERN. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05224 170 PRINTS DnaJ domain signature 68 83 IPR001623 -
Seca12g05224 170 PRINTS DnaJ domain signature 88 108 IPR001623 -
Seca12g05224 170 PRINTS DnaJ domain signature 50 68 IPR001623 -
Seca12g05224 170 SMART dnaj_3 46 108 IPR001623 -
Seca12g05224 170 CDD DnaJ 47 105 IPR001623 -
Seca12g05224 170 ProSitePatterns Nt-dnaJ domain signature. 93 112 IPR018253 -
Seca12g05224 170 Pfam DnaJ domain 47 113 IPR001623 -
Seca12g05224 170 Gene3D DnaJ domain 33 130 IPR036869 -
Seca12g05224 170 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 24 168 - -
Seca12g05224 170 MobiDBLite consensus disorder prediction 145 170 - -
Seca12g05224 170 FunFam Chaperone protein dnaJ 20, chloroplastic 33 140 - -
Seca12g05224 170 SUPERFAMILY Chaperone J-domain 40 112 IPR036869 -
Seca12g05224 170 ProSiteProfiles dnaJ domain profile. 47 116 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05224 Seca-Chr12 140995450 140995962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05224 39 113 C2H2 Transcription Factor Family AT1G74250 41.558 4.37e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05224 - - gmx:100811478 223.402