Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05221 ATGGCCTTCTATGAGAACTCCCTTGGATTTTTCTCCCACTTCACATATAAAGTCACACACAACACAAGTGTGTATTTCCAAATTAAAACTTCAAAACTAGCCTCAGTTTCCTCCAGAGTAGGCTTTAGCAAAGGTAAAAGAGAGATGGCAACTGCAACATCTGGAGCTGTGTTAAATGGGTTGGGATCTTACTTCTTATGTGGAGGAAAGAGGAGCCAGACCCTGCTAGCAGCTGCTATTGGAGGCAAAGTTAATGTTGGTGCTGTTAGTCCTAAAAGTGTCATTGTGGCAGTTGCTGCTGCACCAAAGAAATCATGGATCCCTGCTGTAAAAGGTGGTGGAAATTTCATTGACCCTGAATGGCTTGATGGCTCGCTACCAGGTGACTTTGGCTTTGATCCATTAGGCCTAGGAAAGGACCCAGCATTCCTCAAATGGTATAGAGAAGCTGAGTTAATTCATGGAAGGTGGGCAATGGCTGCAGTTGTAGGCATCTTTGTTGGCCAGGCCTGGAGTGGAGTTCCATGGTTTGAAGCAGGAGCTGATCCTAATGCACTTGCTCCTTTCTCCTTTGGTTCTCTTCTGGGCACCCAGTTGCTTCTCATGGGATGGGTTGAGAGCAAGAGATGGGTGGACTTCTTCAACCCAGATTCACAATCAGTGGAATGGGCCACACCATGGTCAAGAACTGCTGATAACTTTGCCAATTCTACTGGTGATCAAGGCTACCCTGGGGGAAAATTCTTTGACCCATTGGGATTTGCTGGCACAATCAAGGATGGAGTTTACATTCCAGATACAGAGAAGCTAGAAAGACTGAAATTGGCTGAGATTAAGCATGCTAGGATTGCAATGTTAGCTATGCTGATTTTCTACTTTGAGGCTGGACAAGGAAAGACACCTCTTGGTGCTCTTGGCTTGTAA 924 0.4556 MAFYENSLGFFSHFTYKVTHNTSVYFQIKTSKLASVSSRVGFSKGKREMATATSGAVLNGLGSYFLCGGKRSQTLLAAAIGGKVNVGAVSPKSVIVAVAAAPKKSWIPAVKGGGNFIDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGVPWFEAGADPNALAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTADNFANSTGDQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05221 307 Gene3D Chlorophyll a/b binding protein domain 119 305 - -
Seca12g05221 307 SUPERFAMILY Chlorophyll a-b binding protein 116 307 - -
Seca12g05221 307 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 103 305 IPR001344 GO:0009765|GO:0016020
Seca12g05221 307 FunFam Chlorophyll a-b binding protein, chloroplastic 119 306 - -
Seca12g05221 307 Pfam Chlorophyll A-B binding protein 119 295 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05221 Seca-Chr12 140945444 140946814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05221 49 307 Chloroplast and Mitochondria Gene Families AT1G15820 83.462 1.05e-155 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05221 K08917 - gmx:100783223 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05221 12 140945444 140946814 Seca6g05150 6 118601554 118603200 PCT