Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05205 ATGTCTCATTTCGGAAGGTCAGGTCCACCAGACATTTCCGACACTTACTCTCTTCTCGTACTCAACATCACTTTCCGCACAACCGCCGACGACCTGTTCCCTCTCTTTGATAAGTATGGGAAGGTCGTTGATATTTTCATCCCCAAAGATCGAAGGACCGGTGAGTCGAGGGGTTTCGCGTTTGTGCGTTACAAATATGCTGATGAGGCTCAGAAGGCCGTGGATAGGCTCGATGGAAGAATGGTTGATGGTCGTGAAATAACTGTCCAGTTCGCAAAATATGGGCCTAATGCTGAGAGGATTCACAAAGGAAGGATTATTGAATCAGCCCCAAGATCGAAGCGGTCAAGGAGCCGCAGTCCCCGGAAAAGGTATCGTGATGATTACAAAGACAAGGATTACAGGAGGAGAAGTCGCAGCAGAAGTTATGATAGGTATGAACGTGACAGGTACCGAGGGAGAGACAAGGATTATCGTCGCCGAAGCAGGAGCCGTAGTGCCAGTCCTGATTACAAGGGTCGTGGAAGGGGACGCTATGATGATGAGCGTCACAGTAGAAGCCGGAGCAGATCAGTGGATAGCCGCTCCCCTGTACGGCACAGTCCTAGTCCTCGAAGGAGTCCTTCCCCTCAGAGGAGCACTTCCCCTCAAAGGAGCATTTCCCCTAGGAAAAGTCCAAGGGGTGAAAGTCCTGATAATCGTAGCCGTGATGCAAGGTCTCCTACACCACGCAGTGTCTCACCACGTGGTCGCCCTGATGCCTCACGTAGCCCATCCCCTCGAAATTCAAATGGTGATGAATAA 804 0.51 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIESAPRSKRSRSRSPRKRYRDDYKDKDYRRRSRSRSYDRYERDRYRGRDKDYRRRSRSRSASPDYKGRGRGRYDDERHSRSRSRSVDSRSPVRHSPSPRRSPSPQRSTSPQRSISPRKSPRGESPDNRSRDARSPTPRSVSPRGRPDASRSPSPRNSNGDE. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05205 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Seca12g05205 267 MobiDBLite consensus disorder prediction 122 195 - -
Seca12g05205 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Seca12g05205 267 MobiDBLite consensus disorder prediction 196 224 - -
Seca12g05205 267 SMART rrm1_1 17 90 IPR000504 GO:0003723
Seca12g05205 267 MobiDBLite consensus disorder prediction 225 239 - -
Seca12g05205 267 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 255 - -
Seca12g05205 267 SMART rrm2_1 17 90 IPR003954 GO:0003676
Seca12g05205 267 MobiDBLite consensus disorder prediction 102 267 - -
Seca12g05205 267 CDD RRM_SRSF2_SRSF8 18 90 - -
Seca12g05205 267 Gene3D - 5 103 IPR012677 -
Seca12g05205 267 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Seca12g05205 267 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05205 Seca-Chr12 140718922 140722670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05205 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 5.76e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05205 K12891 - gmx:100778928 346.665