Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05203 ATGGAGGAAAGGCATAGACAATTAAGAGAAAGTGGTCGTGAGCTAGCTGTTTCTTGGGCTCTTTGTGCTGTCTGTCTTGTTGGCCATCTCTCTCATTTCTTTGCAGCAAAGGCACCATGGATCCATGCTTTTCATTCCATCGGGTTTCATCTATCCTTATCTTTGTTTACGTTACTTGGTCCTGGTCGCCAACTTATCCTTGATGGCTTAAAAAGCCTTCTTAAAAGGGCGCCAAACATGAACACCTTAGTTGGTCTTGGGGCTTTATCTTCATTTGCAGTCAGTTCATTTGCAGTCTTGCTGCCAAAATTGGGTTGGAAGGCTTTCTTTGAGGAACCAATTATGCTAATTGCATTTGTCTTGTTGGGAAGGAATCTTGAACAGAGAGCTAAAATTAAAGCAGCCAGTGATATGACAGGACTTCTTAGTATATTGCCGTCAAAAGCGCGCCTTCTCATTAACAATGGGGATAAAGAGGTTGGCTCAGTTGTTGAAGTTCCTTCTGACAGTCTTTCTGTTGAAGACCAAATTATTGTATTACCTGGAGATCGTATTCCAGCTGATGGAATTGTGAGAGCTGGTAGAAGCACTGTGGATGAGTCAAGTTTCACTGGGGAGCCACTGCCAGTAACAAAAGTACCTGGGAGTGAGGTTGCAGCTGGAAGTATAAATCTTAATGGGACTCTTACGATGGAAGTGCGGAGGCCAGGTGGTGAGACTGCTATCGGTGACATTGTTCGTCTAGTTGAAGAGGCACAGAGTAAGGAAGCTCCTATACAGCGGTTGGCTGACAAGGTGGCAGGATACTTCACTTATGGAGTGATGGCAGTCTCTGTTACCACATTTACGTTTTGGAGTCTGTTTGGCACACACATTTTACCTGCTACTGTATATCAAGGAAGTGCAGTTTCACTGGCTTTGCAGCTTGCTTGCAGTGTTCTGGTCGTTGCCTGTCCATGTGCACTTGGGTTAGCCACACCTACTGCTGTGCTGGTTGGAACTTCTTTGGGGGCTAAAAGAGGATTACTTTTGCGTGGTGGAAACATTCTAGAGAAATTTGCCATGGTAAACACTGTTGTGTTTGACAAAACAGGGACCCTCACAGTTGGTAGACCTGTTGTGACAAAGATTGTGGCTCCTACATGCAGAGAAAATGCAAACTCAAGCCAAACTAAAGAAAATGCTTTGTCTGATGTTGAGGTTCTGAGGTTAGCAGCTGCTGTAGAATCAAATTCAGTACATCCAGTTGGGAAAGCAATTATGGACGCTGCTCAGGCAGTTAACAGTCACGGTGCTAAGGTGGTAGATGGAACATTCCTGGAAGAACCTGGATCTGGTGCAGTAGCAACCGTTGATAACAAACTGGTTTCTGTTGGGACATTGGACTGGATTACCAGGCATGGAGTTAGGAACGGTATACATCAACAAGTGGAGGAGTATAAAAACCAATCCTTTGTCTACGTTGGGGTTGATGATACTTTGGCTGGTGTGATTTATTTTCAAGATGAGTTAAGGGAAGATGCAAGACACGTTGTTGACACATTGTCTAAGCAAGATATTGGTGTATACATGCTGTCTGGAGACAAAAGGAATGCTGCAGAATATGTTGCATCTCTTGTTGGGATTCCCAAAGAGAAGGTGCTATCTGGAGTGAAACCAGATGAGAAAAAGAAGTTCATAAATGAACTACAAAAACATAACAACATTGTAGCTATGGTTGGTGATGGAATCAACGATGCAGCTGCTCTTGCTTCTTCACATATTGGTATTGCATTAGGTGGAGGTGTTGGAGCTGCCAGTGAGGTGTCTTCTATTGTATTGATGCGCAACCATCTCTCACAGCTACTTGATGCTTTGGAGCTTAGCAGGCTAACCATGAATACTATAAAACAGAATCTTTGGTGGGCTTTCATTTACAACATTGTAGGGATTCCAATTGCAGCTGGAGTGTTATTTCCGGTAAATGGTACCATGCTGACTCCATCAATTGCAGGGGCTCTCATGGGGTTCAGTTCCATTGGCGTAATGACTAACTCATTACTTTTGAGATTCAAATTTTCCTCAAAGCAGCAACAAATACATGGTGCGTTGCCAAAGACCAAACTCCATGTGGATTCTGATACAGTACATCAAAAACAGAAAATGAAGTATCCATATTAG 2160 0.4333 MEERHRQLRESGRELAVSWALCAVCLVGHLSHFFAAKAPWIHAFHSIGFHLSLSLFTLLGPGRQLILDGLKSLLKRAPNMNTLVGLGALSSFAVSSFAVLLPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKAASDMTGLLSILPSKARLLINNGDKEVGSVVEVPSDSLSVEDQIIVLPGDRIPADGIVRAGRSTVDESSFTGEPLPVTKVPGSEVAAGSINLNGTLTMEVRRPGGETAIGDIVRLVEEAQSKEAPIQRLADKVAGYFTYGVMAVSVTTFTFWSLFGTHILPATVYQGSAVSLALQLACSVLVVACPCALGLATPTAVLVGTSLGAKRGLLLRGGNILEKFAMVNTVVFDKTGTLTVGRPVVTKIVAPTCRENANSSQTKENALSDVEVLRLAAAVESNSVHPVGKAIMDAAQAVNSHGAKVVDGTFLEEPGSGAVATVDNKLVSVGTLDWITRHGVRNGIHQQVEEYKNQSFVYVGVDDTLAGVIYFQDELREDARHVVDTLSKQDIGVYMLSGDKRNAAEYVASLVGIPKEKVLSGVKPDEKKKFINELQKHNNIVAMVGDGINDAAALASSHIGIALGGGVGAASEVSSIVLMRNHLSQLLDALELSRLTMNTIKQNLWWAFIYNIVGIPIAAGVLFPVNGTMLTPSIAGALMGFSSIGVMTNSLLLRFKFSSKQQQIHGALPKTKLHVDSDTVHQKQKMKYPY. 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05203 719 Pfam E1-E2 ATPase 144 340 - -
Seca12g05203 719 NCBIfam HAD-IC family P-type ATPase 119 381 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g05203 719 NCBIfam HAD-IC family P-type ATPase 447 652 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g05203 719 Gene3D - 130 253 - -
Seca12g05203 719 SFLD p-type atpase 343 623 IPR044492 -
Seca12g05203 719 PRINTS P-type cation-transporting ATPase superfamily signature 596 608 - -
Seca12g05203 719 PRINTS P-type cation-transporting ATPase superfamily signature 573 592 - -
Seca12g05203 719 PRINTS P-type cation-transporting ATPase superfamily signature 518 528 - -
Seca12g05203 719 PRINTS P-type cation-transporting ATPase superfamily signature 360 374 - -
Seca12g05203 719 PRINTS P-type cation-transporting ATPase superfamily signature 496 507 - -
Seca12g05203 719 PRINTS P-type cation-transporting ATPase superfamily signature 199 213 - -
Seca12g05203 719 Pfam haloacid dehalogenase-like hydrolase 356 585 - -
Seca12g05203 719 SUPERFAMILY Calcium ATPase, transduction domain A 161 249 IPR008250 -
Seca12g05203 719 NCBIfam copper-translocating P-type ATPase 62 683 - -
Seca12g05203 719 SUPERFAMILY HAD-like 358 680 IPR036412 -
Seca12g05203 719 Gene3D - 371 504 IPR023299 GO:0000166
Seca12g05203 719 NCBIfam heavy metal translocating P-type ATPase 80 682 IPR027256 GO:0006812|GO:0016020|GO:0019829
Seca12g05203 719 Gene3D - 351 623 IPR023214 -
Seca12g05203 719 ProSitePatterns E1-E2 ATPases phosphorylation site. 362 368 IPR018303 -
Seca12g05203 719 PANTHER ATP7, ISOFORM B 8 684 - -
Seca12g05203 719 SFLD C1.7: P-type atpase like 343 623 - -
Seca12g05203 719 PRINTS Copper-transporting ATPase signature 550 567 - -
Seca12g05203 719 PRINTS Copper-transporting ATPase signature 343 358 - -
Seca12g05203 719 PRINTS Copper-transporting ATPase signature 646 660 - -
Seca12g05203 719 PRINTS Copper-transporting ATPase signature 113 132 - -
Seca12g05203 719 PRINTS Copper-transporting ATPase signature 65 84 - -
Seca12g05203 719 FunFam Copper-transporting ATPase 1, putative 131 253 - -
Seca12g05203 719 FunFam Copper-transporting ATPase PAA1 chloroplastic 489 640 - -
Seca12g05203 719 CDD P-type_ATPase_Cu-like 13 684 - -
Seca12g05203 719 FunFam Copper-transporting ATPase PAA1 chloroplastic 371 504 - -
Seca12g05203 719 SUPERFAMILY Calcium ATPase, transmembrane domain M 111 655 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05203 Seca-Chr12 140655547 140691421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05203 62 683 Primary Pumps ATPases AT1G63440 39.062 1.89e-125 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05203 K17686 - gmx:100796210 1216.83