Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05202 ATGGATTCTGCGTTCTCTGTCACCACGACGGCGCAGATGGCGCTTTTCAGAGCGCTCAACCGCCATTTCACCGGAGCTCCTCATCGCGCTCTCCTCCGCCGCAACCTCAAATGCGTTCTTACTTCCTGCAACAGCTGCTTCCGCATTCCGTGCTCATCCGCCTCTTTTGCTTCTGCGCCCTTGTTGCCCTCTCTCCCCACCTTCCGCGCGCTGCTACCGCGTACGCCGTGCCGTCCGAGCTGCGTTTCGAGCTCCGCCGCTTCCTTTGCTTCTTCCGCCGGCGGTGGAAATGGCGGCTCTGGAGCCGGCGAAGGCGGAGGAGGCGGCGGTTCTGGCGGTGAGTCAGGGGGTGCTAATCTCAAATTGGTTGGAGACGCAGCTCAGGAGCTTTCGGCTCTTTCGTCTGATGTTATCATTCTCGATGTTTCGGGAATGGTGTGCGGAGGATGTGCAGCAACTGTGAAAAGGATTCTAGAAAGTCGACCACAAGTCTCATCCGCTAGTGTAAATTTAACAACAGAGACAGCAATAGTTTGGCCTGTATCTGAAGCAAAAACTACACCAAATTGGCAAAAGCAATTAGGGGAGACACTTGCAGAACATTTAACTAGCTGTGGTTTTAATTCTAGCCTTCGAGTGGCAGGTGAGGAAGCTAGCAACTGA 663 0.5445 MDSAFSVTTTAQMALFRALNRHFTGAPHRALLRRNLKCVLTSCNSCFRIPCSSASFASAPLLPSLPTFRALLPRTPCRPSCVSSSAASFASSAGGGNGGSGAGEGGGGGGSGGESGGANLKLVGDAAQELSALSSDVIILDVSGMVCGGCAATVKRILESRPQVSSASVNLTTETAIVWPVSEAKTTPNWQKQLGETLAEHLTSCGFNSSLRVAGEEASN. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05202 220 Pfam Heavy-metal-associated domain 140 207 IPR006121 GO:0046872
Seca12g05202 220 CDD HMA 140 207 IPR006121 GO:0046872
Seca12g05202 220 ProSitePatterns Heavy-metal-associated domain. 142 171 IPR017969 GO:0046872
Seca12g05202 220 SUPERFAMILY HMA, heavy metal-associated domain 138 184 IPR036163 GO:0046872
Seca12g05202 220 Gene3D - 137 215 - -
Seca12g05202 220 ProSiteProfiles Heavy-metal-associated domain profile. 136 203 IPR006121 GO:0046872
Seca12g05202 220 FunFam Copper-transporting ATPase PAA1, chloroplastic 136 211 - -
Seca12g05202 220 MobiDBLite consensus disorder prediction 94 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05202 Seca-Chr12 140650948 140653400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05202 121 214 Primary Pumps ATPases AT4G33520 70.213 1.92e-41 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05202 K17686 - vra:106773839 269.626